BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000881
         (1156 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267979.1| PREDICTED: pentatricopeptide repeat-containi...   272   1e-70
ref|XP_002331159.1| predicted protein [Populus trichocarpa] gi|1...   267   3e-69
ref|XP_002527905.1| pentatricopeptide repeat-containing protein,...   265   1e-68
ref|XP_003531991.1| PREDICTED: pentatricopeptide repeat-containi...   250   4e-64
ref|XP_002886593.1| pentatricopeptide repeat-containing protein ...   249   7e-64

>ref|XP_002267979.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770
            [Vitis vinifera]
          Length = 489

 Score =  272 bits (696), Expect = 1e-70
 Identities = 134/189 (70%), Positives = 151/189 (79%)
 Frame = -1

Query: 1156 YLNMIQVLVNLKDVPGAEKCFREWESVRSTYDIRIANALIGAYAKEGLLEKAETLKERAR 977
            YLNMIQVLVNLKD+PGAEKCFREWES  S YDIR+ANALIGAYAK+GLLEKAE LKE AR
Sbjct: 301  YLNMIQVLVNLKDLPGAEKCFREWESGCSIYDIRVANALIGAYAKDGLLEKAEELKEHAR 360

Query: 976  RSGAKPNVKTWEIFMDYHLKKSNTSLAVDCVTNGISIGRGDGRKWVPPQNVVQTLMSHFE 797
            R GAKPN KTWEIF+ YHLK      AVDCV N IS GRGDG+KWVP   ++   M HFE
Sbjct: 361  RRGAKPNAKTWEIFLAYHLKNREMKQAVDCVANAISTGRGDGQKWVPSPEIIGVFMQHFE 420

Query: 796  QARDVEGAESFLETLKKVEDVFGADVFESLIRTYAAAGKTSPSLRRRLKMENVDVSEATK 617
            Q +DV+GAE FLE LK   +  G +VFESLIR YAAAG+TSP +RRRLKMENV+VS++ K
Sbjct: 421  QEKDVDGAEGFLEILKSTVEDLGVEVFESLIRIYAAAGRTSPVMRRRLKMENVEVSDSCK 480

Query: 616  KLLEVVCVD 590
            KLLE V V+
Sbjct: 481  KLLEEVSVE 489


>ref|XP_002331159.1| predicted protein [Populus trichocarpa] gi|118487894|gb|ABK95769.1|
            unknown [Populus trichocarpa] gi|222873242|gb|EEF10373.1|
            predicted protein [Populus trichocarpa]
          Length = 490

 Score =  267 bits (683), Expect = 3e-69
 Identities = 129/189 (68%), Positives = 153/189 (80%)
 Frame = -1

Query: 1156 YLNMIQVLVNLKDVPGAEKCFREWESVRSTYDIRIANALIGAYAKEGLLEKAETLKERAR 977
            YLNMIQVLVNLKDVPGAEKCFREWES  STYDIR+AN +I AYAKEGL++KAE LKERAR
Sbjct: 302  YLNMIQVLVNLKDVPGAEKCFREWESGCSTYDIRVANVVISAYAKEGLVDKAEELKERAR 361

Query: 976  RSGAKPNVKTWEIFMDYHLKKSNTSLAVDCVTNGISIGRGDGRKWVPPQNVVQTLMSHFE 797
            R GAKPN KTWEIF DY+LK  +  L VDC+ N +S GRG+G+KWVP   +V +LM+HFE
Sbjct: 362  RRGAKPNSKTWEIFCDYYLKNGDVKLGVDCIANAVSAGRGNGQKWVPSPVIVGSLMAHFE 421

Query: 796  QARDVEGAESFLETLKKVEDVFGADVFESLIRTYAAAGKTSPSLRRRLKMENVDVSEATK 617
            Q +DV+GAE  +E LKK  D    +VFESLIRTYAAAG+ S  +RRRLKMENV+VS+  +
Sbjct: 422  QQKDVDGAEDLIEILKKAVDDVAVEVFESLIRTYAAAGRKSQLMRRRLKMENVEVSDDCQ 481

Query: 616  KLLEVVCVD 590
            KLLE +CV+
Sbjct: 482  KLLEAICVE 490


>ref|XP_002527905.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223532680|gb|EEF34462.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 490

 Score =  265 bits (678), Expect = 1e-68
 Identities = 131/189 (69%), Positives = 154/189 (81%)
 Frame = -1

Query: 1156 YLNMIQVLVNLKDVPGAEKCFREWESVRSTYDIRIANALIGAYAKEGLLEKAETLKERAR 977
            YLNMIQVLVNLKD+PGAEKCFREWES  S YDIR+AN LI AYAK+GLLEKAE LKERA 
Sbjct: 302  YLNMIQVLVNLKDLPGAEKCFREWESNCSGYDIRVANVLIKAYAKKGLLEKAEELKERAI 361

Query: 976  RSGAKPNVKTWEIFMDYHLKKSNTSLAVDCVTNGISIGRGDGRKWVPPQNVVQTLMSHFE 797
              GAKPN KTWEIF DY+ +  +  L+V+C+ N IS GRGDG+KW+P   VV + M+HFE
Sbjct: 362  GRGAKPNAKTWEIFSDYYFENGDIKLSVECLANAISKGRGDGQKWIPSPEVVASFMAHFE 421

Query: 796  QARDVEGAESFLETLKKVEDVFGADVFESLIRTYAAAGKTSPSLRRRLKMENVDVSEATK 617
            Q +DV+GAE F+E LKK  D   A+VFESLIRTYAAAG+TS  LRRRLKMENV+VSEA +
Sbjct: 422  QQKDVDGAEGFIEILKKATDDVEANVFESLIRTYAAAGRTSQVLRRRLKMENVEVSEAGQ 481

Query: 616  KLLEVVCVD 590
            KLLE++CV+
Sbjct: 482  KLLEMICVE 490


>ref|XP_003531991.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770-like
            [Glycine max]
          Length = 490

 Score =  250 bits (639), Expect = 4e-64
 Identities = 125/189 (66%), Positives = 148/189 (78%)
 Frame = -1

Query: 1156 YLNMIQVLVNLKDVPGAEKCFREWESVRSTYDIRIANALIGAYAKEGLLEKAETLKERAR 977
            YLNMIQVLVNLKD+PGAEKCFREWE    TYDIR+AN LI AY K  +LEKAE LKERAR
Sbjct: 302  YLNMIQVLVNLKDLPGAEKCFREWECGCPTYDIRVANVLIRAYVKLDMLEKAEELKERAR 361

Query: 976  RSGAKPNVKTWEIFMDYHLKKSNTSLAVDCVTNGISIGRGDGRKWVPPQNVVQTLMSHFE 797
            R GAKPN KT EIFMDY+L K +  LAVD +   IS+GRG+G KWVP   ++  +M HFE
Sbjct: 362  RRGAKPNAKTLEIFMDYYLLKGDFKLAVDYLNEAISMGRGNGEKWVPSSRIISIMMRHFE 421

Query: 796  QARDVEGAESFLETLKKVEDVFGADVFESLIRTYAAAGKTSPSLRRRLKMENVDVSEATK 617
            Q +DV+GAE FLE LKK  +  G +VFESLIRTYAAAG+ S +++RRLKMENV+VSE T+
Sbjct: 422  QEKDVDGAEEFLEILKKSVESPGVEVFESLIRTYAAAGRISSAMQRRLKMENVEVSEGTQ 481

Query: 616  KLLEVVCVD 590
            KLLE + V+
Sbjct: 482  KLLEAISVE 490


>ref|XP_002886593.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297332434|gb|EFH62852.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 491

 Score =  249 bits (637), Expect = 7e-64
 Identities = 120/186 (64%), Positives = 150/186 (80%)
 Frame = -1

Query: 1156 YLNMIQVLVNLKDVPGAEKCFREWESVRSTYDIRIANALIGAYAKEGLLEKAETLKERAR 977
            YLNMIQVLV L D+PGAE  F+EW++  STYDIRI N LIGAYAKEGL+EKA+ LKE+A 
Sbjct: 302  YLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAKEGLIEKAKELKEKAP 361

Query: 976  RSGAKPNVKTWEIFMDYHLKKSNTSLAVDCVTNGISIGRGDGRKWVPPQNVVQTLMSHFE 797
            R G K N KTWEIFMDY++K  + + A++C++  +SIG+GDG KW+P Q  V+TLMS+FE
Sbjct: 362  RRGGKANAKTWEIFMDYYVKSGDMAHALECMSKAVSIGKGDGGKWIPSQETVRTLMSYFE 421

Query: 796  QARDVEGAESFLETLKKVEDVFGADVFESLIRTYAAAGKTSPSLRRRLKMENVDVSEATK 617
            Q +DV GAE+ LE LK   D  GA++FESLIRTYAAAGK+ P++RRRLKMENV+V+E TK
Sbjct: 422  QKKDVNGAENLLEILKNGTDNIGAEIFESLIRTYAAAGKSHPAMRRRLKMENVEVNEVTK 481

Query: 616  KLLEVV 599
            KLL+ V
Sbjct: 482  KLLDEV 487