BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000834
         (585 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271178.1| PREDICTED: recQ-mediated genome instability ...   116   2e-40
ref|XP_002328082.1| predicted protein [Populus trichocarpa] gi|1...   107   1e-36
ref|XP_003538189.1| PREDICTED: recQ-mediated genome instability ...   107   5e-34
ref|XP_002889690.1| hypothetical protein ARALYDRAFT_470900 [Arab...   100   3e-32
ref|NP_172315.1| uncharacterized protein [Arabidopsis thaliana] ...    99   4e-32

>ref|XP_002271178.1| PREDICTED: recQ-mediated genome instability protein 2 [Vitis
           vinifera] gi|297734866|emb|CBI17100.3| unnamed protein
           product [Vitis vinifera]
          Length = 134

 Score =  116 bits (290), Expect(2) = 2e-40
 Identities = 58/93 (62%), Positives = 74/93 (79%), Gaps = 1/93 (1%)
 Frame = +3

Query: 117 MDYNLAALKLLSGQLKNARQSQSQDSSTPSALTLFGILFQRAWLQGILVSGSTE-QGHFI 293
           MDY+LAALK++ GQL+ A+++ SQ+     A TL G+LFQRAWLQG+LVS S + QG F+
Sbjct: 1   MDYSLAALKVMCGQLRKAKETTSQN-----AFTLGGVLFQRAWLQGVLVSVSDDAQGRFV 55

Query: 294 LDDGSGIIELSLSNEFRQRNWKLGMYVMVVGAY 392
           LDDG+G+I LSLS +F  RNWK+GMYVMVVG Y
Sbjct: 56  LDDGTGVIHLSLSGDFLHRNWKIGMYVMVVGGY 88



 Score = 75.1 bits (183), Expect(2) = 2e-40
 Identities = 32/38 (84%), Positives = 38/38 (100%)
 Frame = +1

Query: 451 RSGEPPVIKVHKMVDLSPFPDREAMWHLEVIEAYKLFY 564
           RSGEPP+IKVHK+VDLSPFPDRE+MW+LEVIEA++LFY
Sbjct: 91  RSGEPPMIKVHKIVDLSPFPDRESMWYLEVIEAFRLFY 128


>ref|XP_002328082.1| predicted protein [Populus trichocarpa] gi|118483555|gb|ABK93675.1|
           unknown [Populus trichocarpa]
           gi|222837597|gb|EEE75962.1| predicted protein [Populus
           trichocarpa]
          Length = 134

 Score =  107 bits (267), Expect(2) = 1e-36
 Identities = 59/92 (64%), Positives = 70/92 (76%)
 Frame = +3

Query: 117 MDYNLAALKLLSGQLKNARQSQSQDSSTPSALTLFGILFQRAWLQGILVSGSTEQGHFIL 296
           MDY+LAALKLL  QLK+A ++ SQ+     ALTL GILFQRAWLQGILVS   + G  +L
Sbjct: 1   MDYSLAALKLLCVQLKDASETPSQN-----ALTLGGILFQRAWLQGILVSNDGD-GRLLL 54

Query: 297 DDGSGIIELSLSNEFRQRNWKLGMYVMVVGAY 392
           DDG+G+IEL LS +FR R+W  GMYVMVVG Y
Sbjct: 55  DDGTGVIELCLSPDFRLRHWDSGMYVMVVGGY 86



 Score = 71.2 bits (173), Expect(2) = 1e-36
 Identities = 32/38 (84%), Positives = 35/38 (92%)
 Frame = +1

Query: 451 RSGEPPVIKVHKMVDLSPFPDREAMWHLEVIEAYKLFY 564
           R GE P+IKVHKMVDLS FPDREAMW+LEV+EAYKLFY
Sbjct: 89  RHGETPMIKVHKMVDLSAFPDREAMWYLEVMEAYKLFY 126


>ref|XP_003538189.1| PREDICTED: recQ-mediated genome instability protein 2-like [Glycine
           max]
          Length = 142

 Score =  107 bits (268), Expect(2) = 5e-34
 Identities = 58/97 (59%), Positives = 73/97 (75%), Gaps = 4/97 (4%)
 Frame = +3

Query: 117 MDYNLAALKLLSGQLKNARQ----SQSQDSSTPSALTLFGILFQRAWLQGILVSGSTEQG 284
           MDY+LAALKL   QLK AR+     Q+Q S + S+ TL G+LFQR WLQG+LVS S + G
Sbjct: 1   MDYDLAALKLFCSQLKQAREVAMPCQTQ-SQSQSSFTLGGLLFQRPWLQGVLVSAS-DAG 58

Query: 285 HFILDDGSGIIELSLSNEFRQRNWKLGMYVMVVGAYS 395
             +LDDG+ ++ELSL++EFR R WKLGMYVMVVG Y+
Sbjct: 59  SLLLDDGTDLVELSLNSEFRHRPWKLGMYVMVVGGYA 95



 Score = 62.4 bits (150), Expect(2) = 5e-34
 Identities = 28/38 (73%), Positives = 34/38 (89%)
 Frame = +1

Query: 451 RSGEPPVIKVHKMVDLSPFPDREAMWHLEVIEAYKLFY 564
           R G+ P+IKVHK+VDLS  P+REAMW+LEV+EAYKLFY
Sbjct: 97  RPGKLPMIKVHKIVDLSSSPNREAMWYLEVMEAYKLFY 134


>ref|XP_002889690.1| hypothetical protein ARALYDRAFT_470900 [Arabidopsis lyrata subsp.
           lyrata] gi|297335532|gb|EFH65949.1| hypothetical protein
           ARALYDRAFT_470900 [Arabidopsis lyrata subsp. lyrata]
          Length = 136

 Score = 99.8 bits (247), Expect(2) = 3e-32
 Identities = 52/94 (55%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
 Frame = +3

Query: 117 MDYNLAALKLLSGQLKNARQSQSQDSSTPSALTLFGILFQRAWLQGILV--SGSTEQGHF 290
           MDY+LAA+K+L  QL++A+ + SQ+     A  L G+LFQRAWLQG+LV  SG  +  H 
Sbjct: 1   MDYSLAAVKMLCSQLRDAKPTPSQN-----ATALGGVLFQRAWLQGVLVPISGGGDN-HM 54

Query: 291 ILDDGSGIIELSLSNEFRQRNWKLGMYVMVVGAY 392
           +LDDG+G++EL LS++F  R WK GMYVMVVG Y
Sbjct: 55  VLDDGTGLVELGLSSDFALRQWKSGMYVMVVGVY 88



 Score = 64.3 bits (155), Expect(2) = 3e-32
 Identities = 27/39 (69%), Positives = 36/39 (92%)
 Frame = +1

Query: 451 RSGEPPVIKVHKMVDLSPFPDREAMWHLEVIEAYKLFYD 567
           R+G+ P++KVHKMVDLS  PDREAMW+LEV++AY+LFY+
Sbjct: 91  RTGDIPLLKVHKMVDLSVSPDREAMWYLEVMDAYRLFYE 129


>ref|NP_172315.1| uncharacterized protein [Arabidopsis thaliana]
           gi|20258784|gb|AAM13914.1| unknown protein [Arabidopsis
           thaliana] gi|332190163|gb|AEE28284.1| uncharacterized
           protein [Arabidopsis thaliana]
          Length = 137

 Score = 99.4 bits (246), Expect(2) = 4e-32
 Identities = 51/94 (54%), Positives = 68/94 (72%), Gaps = 2/94 (2%)
 Frame = +3

Query: 117 MDYNLAALKLLSGQLKNARQSQSQDSSTPSALTLFGILFQRAWLQGILV--SGSTEQGHF 290
           MDY+LAA+K+L  QL++A+ + SQ+     A +L G+LFQRAWLQG+LV  SG       
Sbjct: 1   MDYSLAAVKMLCSQLRDAKPTPSQN-----AASLGGVLFQRAWLQGVLVPFSGGGGDNCL 55

Query: 291 ILDDGSGIIELSLSNEFRQRNWKLGMYVMVVGAY 392
           +LDDG+G++EL L+N+F  R WK GMYVMVVG Y
Sbjct: 56  VLDDGTGLLELGLTNDFALRQWKSGMYVMVVGVY 89



 Score = 64.3 bits (155), Expect(2) = 4e-32
 Identities = 27/39 (69%), Positives = 36/39 (92%)
 Frame = +1

Query: 451 RSGEPPVIKVHKMVDLSPFPDREAMWHLEVIEAYKLFYD 567
           R+G+ P++KVHKMVDLS  PDREAMW+LEV++AY+LFY+
Sbjct: 92  RTGQIPLLKVHKMVDLSVSPDREAMWYLEVMDAYRLFYE 130