BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042962
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532904.1| pentatricopeptide repeat-containing protein,...   122   4e-26
emb|CBI22269.3| unnamed protein product [Vitis vinifera]              119   3e-25
ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi...   119   3e-25
ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containi...   112   4e-23
ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containi...   112   4e-23

>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 604

 Score =  122 bits (305), Expect = 4e-26
 Identities = 58/95 (61%), Positives = 72/95 (75%)
 Frame = -3

Query: 298 KMSNAIGTPTCVSRKTILEEKISTLHKCSHLNHVKQIQAQIFKFNLHQDPFIAPKLIAAF 119
           +MS     PT VS + + EEK+  LHKC+  NH+K++ AQI K NLH D ++APKLI+AF
Sbjct: 6   RMSLPTRAPTWVSTRRLFEEKLQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAF 65

Query: 118 SLCNQLNLAVNVFYLIQKPNVFLYNTLIRAYTQNS 14
           SLC+Q+NLAVNVF  IQ PNV LYNTLIRA+ QNS
Sbjct: 66  SLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNS 100


>emb|CBI22269.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  119 bits (297), Expect = 3e-25
 Identities = 59/94 (62%), Positives = 72/94 (76%)
 Frame = -3

Query: 295 MSNAIGTPTCVSRKTILEEKISTLHKCSHLNHVKQIQAQIFKFNLHQDPFIAPKLIAAFS 116
           MS  I  PT VS++ +LE+KIS LH+CS LN VKQI AQ+ K NLH++ F+  KLIAAFS
Sbjct: 1   MSVPIRNPTWVSKRRLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFS 60

Query: 115 LCNQLNLAVNVFYLIQKPNVFLYNTLIRAYTQNS 14
           LC Q+ LAVNVF  IQ P+V LYNTLIRA+ +NS
Sbjct: 61  LCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNS 94


>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  119 bits (297), Expect = 3e-25
 Identities = 59/94 (62%), Positives = 72/94 (76%)
 Frame = -3

Query: 295 MSNAIGTPTCVSRKTILEEKISTLHKCSHLNHVKQIQAQIFKFNLHQDPFIAPKLIAAFS 116
           MS  I  PT VS++ +LE+KIS LH+CS LN VKQI AQ+ K NLH++ F+  KLIAAFS
Sbjct: 1   MSVPIRNPTWVSKRRLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFS 60

Query: 115 LCNQLNLAVNVFYLIQKPNVFLYNTLIRAYTQNS 14
           LC Q+ LAVNVF  IQ P+V LYNTLIRA+ +NS
Sbjct: 61  LCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNS 94


>ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 561

 Score =  112 bits (279), Expect = 4e-23
 Identities = 54/94 (57%), Positives = 70/94 (74%)
 Frame = -3

Query: 283 IGTPTCVSRKTILEEKISTLHKCSHLNHVKQIQAQIFKFNLHQDPFIAPKLIAAFSLCNQ 104
           I TP+  S + +LE+K+S LHKC++LN VKQ+ AQI K NLH D F+ PKLI+AFSLC Q
Sbjct: 34  IRTPSWFSTRKLLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQ 93

Query: 103 LNLAVNVFYLIQKPNVFLYNTLIRAYTQNSLHTQ 2
           + LA N F  +Q PNV LYNT+IRA++ NS  +Q
Sbjct: 94  MLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQ 127


>ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  112 bits (279), Expect = 4e-23
 Identities = 54/94 (57%), Positives = 70/94 (74%)
 Frame = -3

Query: 283 IGTPTCVSRKTILEEKISTLHKCSHLNHVKQIQAQIFKFNLHQDPFIAPKLIAAFSLCNQ 104
           I TP+  S + +LE+K+S LHKC++LN VKQ+ AQI K NLH D F+ PKLI+AFSLC Q
Sbjct: 8   IRTPSWFSTRKLLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQ 67

Query: 103 LNLAVNVFYLIQKPNVFLYNTLIRAYTQNSLHTQ 2
           + LA N F  +Q PNV LYNT+IRA++ NS  +Q
Sbjct: 68  MLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQ 101