BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042957
         (237 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E sub...    96   3e-18
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E sub...    96   3e-18
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...    92   6e-17
emb|CBI40152.3| unnamed protein product [Vitis vinifera]               90   2e-16
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...    90   2e-16

>ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
           max]
          Length = 2098

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 49/78 (62%), Positives = 55/78 (70%)
 Frame = -2

Query: 236 PVPPNCLSIPEXXXXXXXXXXXXXXXILRKVLRQVEIIKSSRSGHPNFESHKVEVNDLQS 57
           PVPPNCLS+PE               ILRK+LR+VEIIKSSRSG PNFESH VE NDLQS
Sbjct: 216 PVPPNCLSVPEVSDGVSVMSSDPSITILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQS 275

Query: 56  TVAEYFLARGTAKDSRDI 3
            V +YF  RGT+K +RDI
Sbjct: 276 VVDQYFQIRGTSKPARDI 293


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
           max]
          Length = 2020

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 49/78 (62%), Positives = 55/78 (70%)
 Frame = -2

Query: 236 PVPPNCLSIPEXXXXXXXXXXXXXXXILRKVLRQVEIIKSSRSGHPNFESHKVEVNDLQS 57
           PVPPNCLS+PE               ILRK+LR+VEIIKSSRSG PNFESH VE NDLQS
Sbjct: 216 PVPPNCLSVPEVSDGASVMSSDPSMTILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQS 275

Query: 56  TVAEYFLARGTAKDSRDI 3
            V +YF  RGT+K +RDI
Sbjct: 276 VVDQYFQIRGTSKPARDI 293


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 45/78 (57%), Positives = 54/78 (69%)
 Frame = -2

Query: 236 PVPPNCLSIPEXXXXXXXXXXXXXXXILRKVLRQVEIIKSSRSGHPNFESHKVEVNDLQS 57
           PVPPNCLS+P+               +L+KVL+QVEIIKSSRSG PNFESH+VE  DLQS
Sbjct: 214 PVPPNCLSVPDISDGVSVMSSDLSISMLKKVLKQVEIIKSSRSGEPNFESHEVEAVDLQS 273

Query: 56  TVAEYFLARGTAKDSRDI 3
            V +Y   RGTAK +RD+
Sbjct: 274 AVDQYLQVRGTAKSARDV 291


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 41/78 (52%), Positives = 54/78 (69%)
 Frame = -2

Query: 236 PVPPNCLSIPEXXXXXXXXXXXXXXXILRKVLRQVEIIKSSRSGHPNFESHKVEVNDLQS 57
           PVPPNCLS+P+               +L+KVL+Q+E+IK SRSG PNFESHK+E N+LQS
Sbjct: 272 PVPPNCLSVPDISDGVSIMSSDLSVSMLKKVLKQIEVIKGSRSGEPNFESHKIEANNLQS 331

Query: 56  TVAEYFLARGTAKDSRDI 3
           ++ +Y   RGTAK SR +
Sbjct: 332 SIEQYLEVRGTAKTSRSL 349


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 41/78 (52%), Positives = 54/78 (69%)
 Frame = -2

Query: 236 PVPPNCLSIPEXXXXXXXXXXXXXXXILRKVLRQVEIIKSSRSGHPNFESHKVEVNDLQS 57
           PVPPNCLS+P+               +L+KVL+Q+E+IK SRSG PNFESHK+E N+LQS
Sbjct: 212 PVPPNCLSVPDISDGVSIMSSDLSVSMLKKVLKQIEVIKGSRSGEPNFESHKIEANNLQS 271

Query: 56  TVAEYFLARGTAKDSRDI 3
           ++ +Y   RGTAK SR +
Sbjct: 272 SIEQYLEVRGTAKTSRSL 289