BLASTX nr result

ID: Coptis23_contig00042916 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042916
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267383.1| PREDICTED: NAC domain-containing protein 43-...    80   1e-13
dbj|BAK14367.1| transcription factor [Populus trichocarpa]             72   5e-11
ref|XP_002302672.1| NAC domain protein, IPR003441 [Populus trich...    72   5e-11
gb|ADL36808.1| NAC domain class transcription factor [Malus x do...    70   2e-10
gb|ADL36793.1| NAC domain class transcription factor [Malus x do...    66   3e-09

>ref|XP_002267383.1| PREDICTED: NAC domain-containing protein 43-like [Vitis vinifera]
          Length = 390

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 41/74 (55%), Positives = 56/74 (75%), Gaps = 5/74 (6%)
 Frame = +1

Query: 1   DTSKQLSFFSDPSLMFSTST--HDNDLQFPQIRSAN---RLYHSTQNFNSEIDLWNFKQS 165
           DTSKQL+ F+DPS+ FS+ T  +D+D Q  Q RS++   R YH TQ++N+EIDLW+F +S
Sbjct: 315 DTSKQLACFNDPSMPFSSPTDHNDHDSQLLQPRSSSSTTRSYHPTQDYNTEIDLWSFTRS 374

Query: 166 SSSSSDPLCHMSNS 207
              SSDPLCH+SN+
Sbjct: 375 CLQSSDPLCHISNT 388


>dbj|BAK14367.1| transcription factor [Populus trichocarpa]
          Length = 381

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 41/78 (52%), Positives = 55/78 (70%), Gaps = 7/78 (8%)
 Frame = +1

Query: 1   DTSKQLSFF-SDPSLMFSTSTH-DNDLQFPQIRSA-----NRLYHSTQNFNSEIDLWNFK 159
           +TS+Q + F +DP++ + T T   +DLQFP +RS+     NR YH TQ++NSEIDLWNF 
Sbjct: 306 ETSRQSACFPNDPTMTYCTPTDLHHDLQFPTLRSSFSFPSNRSYHETQDYNSEIDLWNF- 364

Query: 160 QSSSSSSDPLCHMSNSSV 213
            SS SSSDP  H+ N+SV
Sbjct: 365 -SSRSSSDPQWHLPNTSV 381


>ref|XP_002302672.1| NAC domain protein, IPR003441 [Populus trichocarpa]
           gi|222844398|gb|EEE81945.1| NAC domain protein,
           IPR003441 [Populus trichocarpa]
           gi|312618426|gb|ADR00333.1| wood-associated NAC domain
           transcription factor 2B [Populus trichocarpa]
          Length = 371

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 41/78 (52%), Positives = 55/78 (70%), Gaps = 7/78 (8%)
 Frame = +1

Query: 1   DTSKQLSFF-SDPSLMFSTSTH-DNDLQFPQIRSA-----NRLYHSTQNFNSEIDLWNFK 159
           +TS+Q + F +DP++ + T T   +DLQFP +RS+     NR YH TQ++NSEIDLWNF 
Sbjct: 296 ETSRQSACFPNDPTMTYCTPTDLHHDLQFPTLRSSFSFPSNRSYHETQDYNSEIDLWNF- 354

Query: 160 QSSSSSSDPLCHMSNSSV 213
            SS SSSDP  H+ N+SV
Sbjct: 355 -SSRSSSDPQWHLPNTSV 371


>gb|ADL36808.1| NAC domain class transcription factor [Malus x domestica]
          Length = 400

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 8/75 (10%)
 Frame = +1

Query: 1   DTSKQLSFFSDPSLMFSTSTHDND------LQFPQIRSANRLYHSTQNFNSEIDLWNFKQ 162
           +T K LS F DP++ F +S H ND      L +P +R++    H ++ +N+E DLWNF +
Sbjct: 325 ETPKHLSCFGDPNMAFCSSPHPNDQDNDVQLSYPYLRTSRSSDHQSEVYNNENDLWNFTK 384

Query: 163 SSS--SSSDPLCHMS 201
           SSS  SSSDPLCH+S
Sbjct: 385 SSSSPSSSDPLCHLS 399


>gb|ADL36793.1| NAC domain class transcription factor [Malus x domestica]
          Length = 401

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 34/75 (45%), Positives = 51/75 (68%), Gaps = 9/75 (12%)
 Frame = +1

Query: 4   TSKQLSFFSDPSLMFSTST-----HDNDLQ--FPQIRSANRLYHSTQNFNSEIDLWNFKQ 162
           T K LS F DP++ F +S      HD+D+Q  +P +R+++  +H +  +N+E DLWNF +
Sbjct: 326 TPKHLSCFGDPNMAFCSSPPPRNDHDHDVQLSYPYLRTSSSSHHQSDVYNNENDLWNFTK 385

Query: 163 SSS--SSSDPLCHMS 201
           SSS  SS+DPLCH+S
Sbjct: 386 SSSSPSSTDPLCHLS 400


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