BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042846
         (293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|2...    99   4e-19
ref|XP_002305882.1| predicted protein [Populus trichocarpa] gi|2...    99   4e-19
ref|XP_002533531.1| nonsense-mediated mRNA decay protein, putati...    97   1e-18
ref|XP_002265288.1| PREDICTED: 60S ribosomal export protein NMD3...    94   9e-18
emb|CAN60703.1| hypothetical protein VITISV_003522 [Vitis vinifera]    94   9e-18

>ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|222848999|gb|EEE86546.1|
           predicted protein [Populus trichocarpa]
          Length = 511

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 50/102 (49%), Positives = 67/102 (65%), Gaps = 5/102 (4%)
 Frame = +3

Query: 3   NDLEFGKYKKLDLPGVVLIXXXXXXXXXXXXXX-----LKSMNKEVEDLCKKIDKEKLDT 167
           ND+E  KYK L +P  +L+                   LKS+N EV+D   + D+EK+++
Sbjct: 385 NDMELDKYKNLVIPEAILVKKSYEEKRQRKRGKPRSWKLKSLNMEVDDTRARGDQEKMNS 444

Query: 168 EYEEFLKDLEENPELSFNISLYRNKAYQPSEVASNTERVDVP 293
           EYE+FL+DLEENPEL FN+SLYRNK YQPSE+AS T+  D+P
Sbjct: 445 EYEQFLRDLEENPELRFNVSLYRNKEYQPSEMASMTDGEDIP 486


>ref|XP_002305882.1| predicted protein [Populus trichocarpa] gi|222848846|gb|EEE86393.1|
           predicted protein [Populus trichocarpa]
          Length = 511

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 50/102 (49%), Positives = 67/102 (65%), Gaps = 5/102 (4%)
 Frame = +3

Query: 3   NDLEFGKYKKLDLPGVVLIXXXXXXXXXXXXXX-----LKSMNKEVEDLCKKIDKEKLDT 167
           ND+E  KYK L +P  +L+                   LKS+N EV+D   + D+EK+++
Sbjct: 385 NDMELDKYKNLVIPEAILVKKSYEEKRQRKRGKPRSWKLKSLNMEVDDTRARGDQEKMNS 444

Query: 168 EYEEFLKDLEENPELSFNISLYRNKAYQPSEVASNTERVDVP 293
           EYE+FL+DLEENPEL FN+SLYRNK YQPSE+AS T+  D+P
Sbjct: 445 EYEQFLRDLEENPELRFNVSLYRNKEYQPSEMASMTDGEDIP 486


>ref|XP_002533531.1| nonsense-mediated mRNA decay protein, putative [Ricinus communis]
           gi|223526598|gb|EEF28848.1| nonsense-mediated mRNA decay
           protein, putative [Ricinus communis]
          Length = 511

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 53/102 (51%), Positives = 65/102 (63%), Gaps = 5/102 (4%)
 Frame = +3

Query: 3   NDLEFGKYKKLDLPGVVLIXXXXXXXXXXXXXX-----LKSMNKEVEDLCKKIDKEKLDT 167
           ND+E  KYK L LP  +LI                   LKS+  EV+D   + D+EK+DT
Sbjct: 385 NDIELDKYKGLVLPEAILIKKSYEEKRQRKRGKPRAWKLKSLEMEVDDSRGRNDQEKMDT 444

Query: 168 EYEEFLKDLEENPELSFNISLYRNKAYQPSEVASNTERVDVP 293
           EYE+FL+DLEEN EL FN+SLYRNK YQPSE+AS T+  DVP
Sbjct: 445 EYEQFLRDLEENAELRFNVSLYRNKEYQPSEMASVTDGEDVP 486


>ref|XP_002265288.1| PREDICTED: 60S ribosomal export protein NMD3-like [Vitis vinifera]
          Length = 510

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 51/102 (50%), Positives = 65/102 (63%), Gaps = 5/102 (4%)
 Frame = +3

Query: 3   NDLEFGKYKKLDLPGVVLIXXXXXXXXXXXXXX-----LKSMNKEVEDLCKKIDKEKLDT 167
           ND+E  KY+   LP  +LI                   LKS+N EV+D   + D+EK++T
Sbjct: 384 NDMELEKYRGFVLPEAILIKKSYEEKRQRKRGKPRSWKLKSLNMEVDDSKGRADQEKMNT 443

Query: 168 EYEEFLKDLEENPELSFNISLYRNKAYQPSEVASNTERVDVP 293
           EYE FL+DLEE+PEL FNISLYRNK YQPSE+AS T+  D+P
Sbjct: 444 EYEVFLRDLEEDPELRFNISLYRNKEYQPSEMASMTDGEDLP 485


>emb|CAN60703.1| hypothetical protein VITISV_003522 [Vitis vinifera]
          Length = 594

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 51/102 (50%), Positives = 65/102 (63%), Gaps = 5/102 (4%)
 Frame = +3

Query: 3   NDLEFGKYKKLDLPGVVLIXXXXXXXXXXXXXX-----LKSMNKEVEDLCKKIDKEKLDT 167
           ND+E  KY+   LP  +LI                   LKS+N EV+D   + D+EK++T
Sbjct: 384 NDMELEKYRGFVLPEAILIKKSYEEKRQRKRGKPRSWKLKSLNMEVDDSKGRADQEKMNT 443

Query: 168 EYEEFLKDLEENPELSFNISLYRNKAYQPSEVASNTERVDVP 293
           EYE FL+DLEE+PEL FNISLYRNK YQPSE+AS T+  D+P
Sbjct: 444 EYEVFLRDLEEDPELRFNISLYRNKEYQPSEMASMTDGEDLP 485