BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042744
         (324 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001767264.1| condensin complex component SMC1 [Physcomitr...    54   1e-06
ref|XP_002273034.2| PREDICTED: structural maintenance of chromos...    56   4e-06
emb|CBI37123.3| unnamed protein product [Vitis vinifera]               56   4e-06
ref|NP_001030859.1| structural maintenance of chromosomes 1 [Ara...    55   8e-06
ref|NP_001190092.1| structural maintenance of chromosomes 1 [Ara...    55   8e-06

>ref|XP_001767264.1| condensin complex component SMC1 [Physcomitrella patens subsp.
            patens] gi|162681519|gb|EDQ67945.1| condensin complex
            component SMC1 [Physcomitrella patens subsp. patens]
          Length = 1247

 Score = 54.3 bits (129), Expect(2) = 1e-06
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
 Frame = +2

Query: 2    EKIVAALALLFSMHSYRPYLG*NPCSIGQPKCFQGCWLYEIEIMQ*VQ-----ELKASDG 166
            EK VAALALLF++HS+RP    +P  +          L   ++   ++     E+K  DG
Sbjct: 1143 EKTVAALALLFAIHSFRP----SPFFVLDEVDAALDNLNVAKVAAYIRAKSRPEVKDGDG 1198

Query: 167  ESGLTFQSIGISQKDNFYDKVEALVGV 247
              G+ FQS+ IS KD FYDK +AL+GV
Sbjct: 1199 GKGIGFQSVVISLKDTFYDKADALIGV 1225



 Score = 23.1 bits (48), Expect(2) = 1e-06
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 268  CSKTLSSDLNKY 303
            CSKTL+ DL KY
Sbjct: 1233 CSKTLTFDLGKY 1244


>ref|XP_002273034.2| PREDICTED: structural maintenance of chromosomes protein 1A-like
            [Vitis vinifera]
          Length = 1309

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 41/88 (46%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
 Frame = +2

Query: 2    EKIVAALALLFSMHSYRPYLG*NPCSIGQPKCFQGCWLYEIEIMQ*VQELKAS------D 163
            EK VAALALLFS+HSYRP    +P  I          L   ++   ++           D
Sbjct: 1204 EKTVAALALLFSIHSYRP----SPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARGNQD 1259

Query: 164  GESGLTFQSIGISQKDNFYDKVEALVGV 247
            GE G  FQSI IS KD+FYDK EALVGV
Sbjct: 1260 GEGGSGFQSIVISLKDSFYDKAEALVGV 1287


>emb|CBI37123.3| unnamed protein product [Vitis vinifera]
          Length = 2295

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 41/88 (46%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
 Frame = +2

Query: 2    EKIVAALALLFSMHSYRPYLG*NPCSIGQPKCFQGCWLYEIEIMQ*VQELKAS------D 163
            EK VAALALLFS+HSYRP    +P  I          L   ++   ++           D
Sbjct: 2190 EKTVAALALLFSIHSYRP----SPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARGNQD 2245

Query: 164  GESGLTFQSIGISQKDNFYDKVEALVGV 247
            GE G  FQSI IS KD+FYDK EALVGV
Sbjct: 2246 GEGGSGFQSIVISLKDSFYDKAEALVGV 2273


>ref|NP_001030859.1| structural maintenance of chromosomes 1 [Arabidopsis thaliana]
           gi|332645743|gb|AEE79264.1| structural maintenance of
           chromosomes 1 [Arabidopsis thaliana]
          Length = 453

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = +2

Query: 2   EKIVAALALLFSMHSYRP----YLG*NPCSIGQPKCFQGCWLYEIEIMQ*VQELKASDGE 169
           EK VAALALLFS+HSYRP     L     ++      +       +  Q  ++ +  D E
Sbjct: 348 EKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKVAKFIRSKSCQAARDNQ--DAE 405

Query: 170 SGLTFQSIGISQKDNFYDKVEALVGV 247
            G  FQSI IS KD+FYDK EALVGV
Sbjct: 406 DGNGFQSIVISLKDSFYDKAEALVGV 431


>ref|NP_001190092.1| structural maintenance of chromosomes 1 [Arabidopsis thaliana]
            gi|332645744|gb|AEE79265.1| structural maintenance of
            chromosomes 1 [Arabidopsis thaliana]
          Length = 1239

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = +2

Query: 2    EKIVAALALLFSMHSYRP----YLG*NPCSIGQPKCFQGCWLYEIEIMQ*VQELKASDGE 169
            EK VAALALLFS+HSYRP     L     ++      +       +  Q  ++ +  D E
Sbjct: 1134 EKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKVAKFIRSKSCQAARDNQ--DAE 1191

Query: 170  SGLTFQSIGISQKDNFYDKVEALVGV 247
             G  FQSI IS KD+FYDK EALVGV
Sbjct: 1192 DGNGFQSIVISLKDSFYDKAEALVGV 1217