BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042668
         (281 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...    83   5e-17
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...    81   2e-16
ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containi...    78   3e-16
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...    77   7e-15
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...    75   1e-14

>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score = 83.2 bits (204), Expect(2) = 5e-17
 Identities = 35/60 (58%), Positives = 50/60 (83%)
 Frame = -2

Query: 256 ESIEKCWSLVK*LKNAGHNIDTDTYMKLSRAFQRNMMIKDAVQLYEVMIDGPYKPSVLHC 77
           +SI + WS+V+ +K+ GH +D DTY+K+SR FQ+N M++DAV+LYE+M+DGPYKPSV  C
Sbjct: 279 DSIGEFWSMVEEMKSKGHEMDIDTYIKISRQFQKNKMLEDAVKLYEIMMDGPYKPSVQDC 338



 Score = 29.3 bits (64), Expect(2) = 5e-17
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -3

Query: 69  LLHAISLSDTPDLDLAFRVFRNY 1
           LL +ISLS  PDL L FRV   Y
Sbjct: 341 LLRSISLSSNPDLALVFRVTEKY 363


>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score = 80.9 bits (198), Expect(2) = 2e-16
 Identities = 35/60 (58%), Positives = 49/60 (81%)
 Frame = -2

Query: 256 ESIEKCWSLVK*LKNAGHNIDTDTYMKLSRAFQRNMMIKDAVQLYEVMIDGPYKPSVLHC 77
           +SI + WS+V+ +KNAGH +D DTY+K+SR FQ+N ++ DAV+LYE M+DGP+KPSV  C
Sbjct: 277 DSIGEFWSVVEEMKNAGHEMDIDTYIKISRQFQKNKLMGDAVKLYEFMMDGPFKPSVQDC 336



 Score = 29.6 bits (65), Expect(2) = 2e-16
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 75  SALLHAISLSDTPDLDLAFRVFRNY 1
           S LL +IS S+ PDL+L FRV   Y
Sbjct: 337 SMLLRSISASNYPDLNLVFRVVNKY 361


>ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 77.8 bits (190), Expect(2) = 3e-16
 Identities = 33/64 (51%), Positives = 49/64 (76%)
 Frame = -2

Query: 268 LIKYESIEKCWSLVK*LKNAGHNIDTDTYMKLSRAFQRNMMIKDAVQLYEVMIDGPYKPS 89
           L   +SIEK WS+++ +K+ GH +D DTY+K+S+  Q+N M++DAV+LYE+ +DG YKPS
Sbjct: 278 LASTDSIEKFWSVIEEMKSVGHELDIDTYIKISKKLQKNKMMEDAVKLYELTMDGSYKPS 337

Query: 88  VLHC 77
           V  C
Sbjct: 338 VKDC 341



 Score = 32.0 bits (71), Expect(2) = 3e-16
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = -3

Query: 75  SALLHAISLSDTPDLDLAFRVFRNY 1
           S LL +IS SD P+LDL FRV + Y
Sbjct: 342 SLLLKSISASDDPNLDLVFRVSKKY 366


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score = 76.6 bits (187), Expect(2) = 7e-15
 Identities = 32/60 (53%), Positives = 48/60 (80%)
 Frame = -2

Query: 256 ESIEKCWSLVK*LKNAGHNIDTDTYMKLSRAFQRNMMIKDAVQLYEVMIDGPYKPSVLHC 77
           +SIE  W +++ +K+A H ID DTY+K+SR FQ++ M+ +AV+LYE+M+DGPYKPS+  C
Sbjct: 272 DSIEAFWGVIEEMKHANHEIDIDTYIKISRQFQKSKMMGEAVKLYELMMDGPYKPSLQDC 331



 Score = 28.5 bits (62), Expect(2) = 7e-15
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 75  SALLHAISLSDTPDLDLAFRVFRNY 1
           S LL  I+ SD PDL L +RV + +
Sbjct: 332 SVLLRTIAASDNPDLSLVYRVAKKF 356


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 74.7 bits (182), Expect(2) = 1e-14
 Identities = 33/64 (51%), Positives = 48/64 (75%)
 Frame = -2

Query: 268 LIKYESIEKCWSLVK*LKNAGHNIDTDTYMKLSRAFQRNMMIKDAVQLYEVMIDGPYKPS 89
           L + ESIE+ WS+++ +K  GH +D DTY+K++R  QRN M++DAV+LYE+M+DG  KP 
Sbjct: 274 LPRAESIEEFWSVIEEMKRVGHELDIDTYIKITRQLQRNRMMEDAVKLYELMMDGSCKPL 333

Query: 88  VLHC 77
           V  C
Sbjct: 334 VQDC 337



 Score = 29.6 bits (65), Expect(2) = 1e-14
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -3

Query: 69  LLHAISLSDTPDLDLAFRVFRNY 1
           LL +IS +D P+LDL FRV + Y
Sbjct: 340 LLKSISANDKPNLDLVFRVAKKY 362