BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042665
         (347 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containi...   176   2e-42
ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago t...   169   2e-40
ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containi...   145   4e-33
emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]   145   4e-33
ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [S...   141   5e-32

>ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 540

 Score =  176 bits (445), Expect = 2e-42
 Identities = 82/114 (71%), Positives = 96/114 (84%)
 Frame = -3

Query: 342 VERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMQMQGTKPNHVTFVGLLSA 163
           V++A E+F+E+  KD  AWT MISVFALHGLG +AF  F EM+  G KPNHVTFVGLLSA
Sbjct: 312 VQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLSA 371

Query: 162 CAHSGLVEKGRWCFNKMKQVYSIKPQVQHYACMVDLLGRAELFEEAEALIRSMP 1
           CAHSGLVE+GRWCF+ MK+VYSI+PQV HYACMVD+L RA LF+E+E LIRSMP
Sbjct: 372 CAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMP 425



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 31/117 (26%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
 Frame = -3

Query: 342 VERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMQMQG---TKPNHVTFVGL 172
           ++ A+++F++++ ++++ W ++I+  A  G  +E+ ELF EMQ+      KP+ +T   +
Sbjct: 208 LDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKITIASV 267

Query: 171 LSACAHSGLVEKGRWCFNKMKQVYSIKPQVQHYACMVDLLGRAELFEEAEALIRSMP 1
           LSACA  G ++ G+W    +++   I+  V     +V++ G+    ++A  +   MP
Sbjct: 268 LSACAQLGAIDHGKWVHGYLRR-NGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMP 323


>ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355497290|gb|AES78493.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 541

 Score =  169 bits (428), Expect = 2e-40
 Identities = 78/114 (68%), Positives = 96/114 (84%)
 Frame = -3

Query: 342 VERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMQMQGTKPNHVTFVGLLSA 163
           V++A+E+F ++  KD  AWTAMISVFALHG G++AF+ F EM+  G KPNHVTFVGLLSA
Sbjct: 316 VQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSA 375

Query: 162 CAHSGLVEKGRWCFNKMKQVYSIKPQVQHYACMVDLLGRAELFEEAEALIRSMP 1
           C+HSGLVE+GR CF+ MK+VYSI+PQ+ HYACMVD+L RA LF+EA  LIRSMP
Sbjct: 376 CSHSGLVEQGRCCFDVMKRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSMP 429



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
 Frame = -3

Query: 342 VERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMQMQG----TKPNHVTFVG 175
           VE A+ +F++++ ++++ W ++I+     G  +E+ E+F EMQ        KP+ +T   
Sbjct: 211 VEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIAS 270

Query: 174 LLSACAHSGLVEKGRWCFNKMKQVYSIKPQVQHYACMVDLLGRAELFEEAEALIRSMP 1
           +LSACA  G ++ G+W    +++   I+  V     +V++ G+    ++A  +   MP
Sbjct: 271 VLSACALLGSIDHGKWVHAYLRK-NDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMP 327


>ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  145 bits (365), Expect = 4e-33
 Identities = 65/114 (57%), Positives = 83/114 (72%)
 Frame = -3

Query: 342 VERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMQMQGTKPNHVTFVGLLSA 163
           +E+A+EVFK +++K V+ WT+MI   ALHGLGREA E+F  M+    KPN +TFV +LSA
Sbjct: 322 IEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSA 381

Query: 162 CAHSGLVEKGRWCFNKMKQVYSIKPQVQHYACMVDLLGRAELFEEAEALIRSMP 1
           C H GLVE GRW F  M   Y IKP++QHY CM+DLLGRA   +EA+ L+R MP
Sbjct: 382 CCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMP 435



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 31/113 (27%), Positives = 62/113 (54%)
 Frame = -3

Query: 342 VERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMQMQGTKPNHVTFVGLLSA 163
           V+ A  +F+ +  ++V++WTA+I+ +A      EA  +F  MQ++  +P+ +  +  LSA
Sbjct: 221 VDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSA 280

Query: 162 CAHSGLVEKGRWCFNKMKQVYSIKPQVQHYACMVDLLGRAELFEEAEALIRSM 4
           CAH G +E G W  N + + + +   V     ++D+  +    E+A  + ++M
Sbjct: 281 CAHLGALELGEWIHNYIDK-HGLSKIVPLNNALIDMYAKCGKIEKALEVFKNM 332


>emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  145 bits (365), Expect = 4e-33
 Identities = 65/114 (57%), Positives = 83/114 (72%)
 Frame = -3

Query: 342 VERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMQMQGTKPNHVTFVGLLSA 163
           +E+A+EVFK +++K V+ WT+MI   ALHGLGREA E+F  M+    KPN +TFV +LSA
Sbjct: 322 IEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSA 381

Query: 162 CAHSGLVEKGRWCFNKMKQVYSIKPQVQHYACMVDLLGRAELFEEAEALIRSMP 1
           C H GLVE GRW F  M   Y IKP++QHY CM+DLLGRA   +EA+ L+R MP
Sbjct: 382 CCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMP 435



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 31/113 (27%), Positives = 62/113 (54%)
 Frame = -3

Query: 342 VERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMQMQGTKPNHVTFVGLLSA 163
           V+ A  +F+ +  ++V++WTA+I+ +A      EA  +F  MQ++  +P+ +  +  LSA
Sbjct: 221 VDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSA 280

Query: 162 CAHSGLVEKGRWCFNKMKQVYSIKPQVQHYACMVDLLGRAELFEEAEALIRSM 4
           CAH G +E G W  N + + + +   V     ++D+  +    E+A  + ++M
Sbjct: 281 CAHLGALELGEWIHNYIDK-HGLSKIVPLNNALIDMYAKCGKIEKALEVFKNM 332


>ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
           gi|241927367|gb|EES00512.1| hypothetical protein
           SORBIDRAFT_03g010050 [Sorghum bicolor]
          Length = 506

 Score =  141 bits (356), Expect = 5e-32
 Identities = 63/115 (54%), Positives = 84/115 (73%)
 Frame = -3

Query: 345 CVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMQMQGTKPNHVTFVGLLS 166
           C+E+AVEVF+ ++ K V+ WT +I+ FALHGLG +A E+F  M+ +   PN VTF+ +LS
Sbjct: 261 CIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILS 320

Query: 165 ACAHSGLVEKGRWCFNKMKQVYSIKPQVQHYACMVDLLGRAELFEEAEALIRSMP 1
           AC+H GL + GRW FN M   Y IKPQV+HY CMVDLLGRA   +EA+ L++ MP
Sbjct: 321 ACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMP 375



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 29/110 (26%), Positives = 57/110 (51%)
 Frame = -3

Query: 333 AVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMQMQGTKPNHVTFVGLLSACAH 154
           A E+F  +  ++V++WT +I  +A      EA E+F  MQ++G +P+ V  + +LSAC  
Sbjct: 164 ARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSVLSACGD 223

Query: 153 SGLVEKGRWCFNKMKQVYSIKPQVQHYACMVDLLGRAELFEEAEALIRSM 4
            G V+ G W  ++      ++ ++     ++D+  +    E+A  +   M
Sbjct: 224 LGAVDLGEW-VHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGM 272