BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042657
         (295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524459.1| conserved hypothetical protein [Ricinus comm...    74   9e-12
ref|XP_002313732.1| predicted protein [Populus trichocarpa] gi|2...    70   1e-10
ref|XP_002281877.1| PREDICTED: zinc finger CCCH domain-containin...    66   3e-09
ref|XP_004139420.1| PREDICTED: zinc finger CCCH domain-containin...    66   3e-09
ref|XP_003609280.1| Zinc finger CCCH domain-containing protein [...    59   3e-07

>ref|XP_002524459.1| conserved hypothetical protein [Ricinus communis]
           gi|223536247|gb|EEF37899.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 341

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
 Frame = +2

Query: 5   PFASSGDDSVGFWPEIPINNN-------DRPVPPLKRPRNSEATPLVPVXXXXXXXXXXX 163
           P   SG D++G WP+ P+N+N       D   PP KRPRNSE                  
Sbjct: 15  PTYQSGSDAIGIWPQFPMNSNEQFDPQFDHHQPPFKRPRNSEDN------NQSMNYRMPP 68

Query: 164 XXXXXXXXXXXKLFFKTRLCEKFRQGTCPYGSSCHYAHGIEEMR 295
                       +FFKTR+C KF+ G+C  G +C++AHG+++MR
Sbjct: 69  PNNLPINKGTTNIFFKTRMCAKFKTGSCRNGENCNFAHGMQDMR 112


>ref|XP_002313732.1| predicted protein [Populus trichocarpa] gi|222850140|gb|EEE87687.1|
           predicted protein [Populus trichocarpa]
          Length = 341

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
 Frame = +2

Query: 17  SGDDSVGFWPEIPINNNDR---PVPPLKRPRNSEATPLVPVXXXXXXXXXXXXXXXXXXX 187
           +G D++G WP+  +NN ++     PP KRPRNSE  P   V                   
Sbjct: 19  AGSDAIGVWPQFVMNNIEQFEHHQPPYKRPRNSEDNPNQSVNSRTPPTNNLPVHKGAT-- 76

Query: 188 XXXKLFFKTRLCEKFRQGTCPYGSSCHYAHGIEEMR 295
               +FFKTR+C KF+ GTC  G +C++AHG++++R
Sbjct: 77  ---NIFFKTRVCAKFKTGTCRNGENCNFAHGMQDLR 109


>ref|XP_002281877.1| PREDICTED: zinc finger CCCH domain-containing protein 39-like
           [Vitis vinifera]
          Length = 349

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
 Frame = +2

Query: 20  GDDSVGFWPEIPINNNDRPV------PPLKRPRNSEATPLVPVXXXXXXXXXXXXXXXXX 181
           GDD +G W + P+NN +  V      PP KR RNSE   +                    
Sbjct: 20  GDDDIGSWSQFPMNNEEYEVHSHFEYPPHKRTRNSEGQ-MPNSSPHPSMNPRIHPPNAPT 78

Query: 182 XXXXXKLFFKTRLCEKFRQGTCPYGSSCHYAHGIEEMR 295
                 +FFKTR+C KF+ G C  G +C++AHG+E+MR
Sbjct: 79  SRGTSNIFFKTRICAKFKLGQCRNGENCNFAHGMEDMR 116


>ref|XP_004139420.1| PREDICTED: zinc finger CCCH domain-containing protein 39-like
           [Cucumis sativus] gi|449520655|ref|XP_004167349.1|
           PREDICTED: zinc finger CCCH domain-containing protein
           39-like [Cucumis sativus]
          Length = 347

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
 Frame = +2

Query: 8   FASSGDDSVGFWPEIPINNNDRPV-------PPLKRPRNSEATPLVPVXXXXXXXXXXXX 166
           + S+GD S G W + P N+   P        PP KR RNSE  P  P+            
Sbjct: 18  YGSNGDAS-GCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENPSSPISYSNPSLNSRGQ 76

Query: 167 XXXXXXXXXXK-LFFKTRLCEKFRQGTCPYGSSCHYAHGIEEMR 295
                       +FFKTR+C KF+ G C  G+SC++AHG+E+MR
Sbjct: 77  PPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120


>ref|XP_003609280.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355510335|gb|AES91477.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 297

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 33/96 (34%), Positives = 46/96 (47%)
 Frame = +2

Query: 8   FASSGDDSVGFWPEIPINNNDRPVPPLKRPRNSEATPLVPVXXXXXXXXXXXXXXXXXXX 187
           FASS +D +   P+IP+ N+       KR R ++  P                       
Sbjct: 17  FASSNNDIIEVRPQIPMQNDHFEPHSFKRARIADNNP----PPSGLMCPPSRMIQPPPNR 72

Query: 188 XXXKLFFKTRLCEKFRQGTCPYGSSCHYAHGIEEMR 295
               +FFKTR+C KFR GTC  G +C+YAHG +E+R
Sbjct: 73  GTSSIFFKTRICTKFRFGTCRNGENCNYAHGADEIR 108