BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042582
         (327 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containi...   113   1e-23
ref|XP_002322556.1| predicted protein [Populus trichocarpa] gi|2...   105   3e-21
ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containi...   103   1e-20
ref|XP_002532711.1| pentatricopeptide repeat-containing protein,...    98   6e-19
ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago t...    97   2e-18

>ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  113 bits (283), Expect = 1e-23
 Identities = 55/77 (71%), Positives = 65/77 (84%)
 Frame = +3

Query: 9   GIRLGKEVHGYSLRVGDLRTFTNNALMTMYAKLGRVDYSLALFKMFENRDMVSWNTMISS 188
           G+RLGK++HGYSLRVGD +TFTNNALM MYAKLGRVD S ALF+ F +RDMVSWNTMISS
Sbjct: 212 GLRLGKQLHGYSLRVGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISS 271

Query: 189 LVQNDQISEAVKLFGVM 239
             Q+D+ SEA+  F +M
Sbjct: 272 FSQSDRFSEALAFFRLM 288



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
 Frame = +3

Query: 24  KEVHGYSLRVGDLRT-FTNNALMTMYAKLGRVDYSLALFKMFENRDMVSWNTMISSLVQN 200
           + +HGY++++G     +  NALM MY+++G++D S  +F   E RD VSWNTMI+  V +
Sbjct: 420 ESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLS 479

Query: 201 DQISEAVKLFGVMPRRDS 254
            + S A+ L   M R ++
Sbjct: 480 GRYSNALVLLHEMQRMEN 497


>ref|XP_002322556.1| predicted protein [Populus trichocarpa] gi|222867186|gb|EEF04317.1|
           predicted protein [Populus trichocarpa]
          Length = 702

 Score =  105 bits (263), Expect = 3e-21
 Identities = 47/92 (51%), Positives = 67/92 (72%)
 Frame = +3

Query: 51  VGDLRTFTNNALMTMYAKLGRVDYSLALFKMFENRDMVSWNTMISSLVQNDQISEAVKLF 230
           + +  T T N+++++YAK GR++ +  LF     R++VSWNTM+S  + N +  EA KLF
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLF 60

Query: 231 GVMPRRDSFTWTLMVTCYTRNGEMGKARECFE 326
            +MPRRD F+WTLM+TCYTRNGE+ KARE F+
Sbjct: 61  VIMPRRDLFSWTLMITCYTRNGEVEKARELFD 92



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 34/78 (43%), Positives = 51/78 (65%)
 Frame = +3

Query: 84  LMTMYAKLGRVDYSLALFKMFENRDMVSWNTMISSLVQNDQISEAVKLFGVMPRRDSFTW 263
           +++ +A+ G +  S  LF    +R++VSWN MIS+ VQ  +I EA +LF  MP RDS +W
Sbjct: 201 MLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPERDSVSW 260

Query: 264 TLMVTCYTRNGEMGKARE 317
           T M+  Y R G++ +ARE
Sbjct: 261 TTMINGYVRIGKLDEARE 278



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 33/82 (40%), Positives = 48/82 (58%)
 Frame = +3

Query: 78  NALMTMYAKLGRVDYSLALFKMFENRDMVSWNTMISSLVQNDQISEAVKLFGVMPRRDSF 257
           NA++  YA  GR++ +L L K   N+DMV+WNTMIS   Q  Q+  AVK+F  M  RD  
Sbjct: 323 NAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISCYAQVGQMDRAVKIFEEMGERDLV 382

Query: 258 TWTLMVTCYTRNGEMGKARECF 323
           +W  ++  +  NG+   A + F
Sbjct: 383 SWNSLIAGFMLNGQNLDALKSF 404



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/83 (31%), Positives = 49/83 (59%)
 Frame = +3

Query: 78  NALMTMYAKLGRVDYSLALFKMFENRDMVSWNTMISSLVQNDQISEAVKLFGVMPRRDSF 257
           NA+++ Y K GRV+ +  LF     ++++SWN+M++   QN ++   ++ F  M  RD  
Sbjct: 106 NAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVV 165

Query: 258 TWTLMVTCYTRNGEMGKARECFE 326
           +W LMV  + + G++  A + F+
Sbjct: 166 SWNLMVDGFIQVGDLDSAWKFFQ 188



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 27/82 (32%), Positives = 46/82 (56%)
 Frame = +3

Query: 81  ALMTMYAKLGRVDYSLALFKMFENRDMVSWNTMISSLVQNDQISEAVKLFGVMPRRDSFT 260
           A+++ Y +  +VD +   F      D+V WN MI+    + +I+EA+ L   M  +D  T
Sbjct: 293 AMISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVT 352

Query: 261 WTLMVTCYTRNGEMGKARECFE 326
           W  M++CY + G+M +A + FE
Sbjct: 353 WNTMISCYAQVGQMDRAVKIFE 374



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 25/83 (30%), Positives = 47/83 (56%)
 Frame = +3

Query: 78  NALMTMYAKLGRVDYSLALFKMFENRDMVSWNTMISSLVQNDQISEAVKLFGVMPRRDSF 257
           N ++  + ++G +D +   F+  +  ++VSW TM+S   +N  I E+ +LF  MP R+  
Sbjct: 168 NLMVDGFIQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIV 227

Query: 258 TWTLMVTCYTRNGEMGKARECFE 326
           +W  M++ Y +  E+ +A   FE
Sbjct: 228 SWNAMISAYVQRCEIDEASRLFE 250


>ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 1135

 Score =  103 bits (258), Expect = 1e-20
 Identities = 48/73 (65%), Positives = 63/73 (86%)
 Frame = +3

Query: 3   REGIRLGKEVHGYSLRVGDLRTFTNNALMTMYAKLGRVDYSLALFKMFENRDMVSWNTMI 182
           R G+RLGK+VH Y+LR GDLRT+TNNAL+TMYA+LGRV+ + ALF +F+ +D+VSWNT+I
Sbjct: 447 RGGVRLGKQVHAYTLRNGDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVI 506

Query: 183 SSLVQNDQISEAV 221
           SSL QND+  EA+
Sbjct: 507 SSLSQNDRFEEAL 519



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
 Frame = +3

Query: 30  VHGYSLRVGDLRT-FTNNALMTMYAKLGRVDYSLALFKMFENRDMVSWNTMISSLVQNDQ 206
           +HGY ++ G  +  +  NALM MY+++GRV+ S  +F     RD+VSWNTMI+  +   +
Sbjct: 659 IHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGR 718

Query: 207 ISEAVKLFGVMPRR 248
             +A+ L   M RR
Sbjct: 719 YDDALNLLHEMQRR 732


>ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527557|gb|EEF29678.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 679

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 45/72 (62%), Positives = 58/72 (80%)
 Frame = +3

Query: 6   EGIRLGKEVHGYSLRVGDLRTFTNNALMTMYAKLGRVDYSLALFKMFENRDMVSWNTMIS 185
           EG+RLGK++HGY  R G   TFTNNALMTMYA LGR+D +  LFK+FE+R+++SWNTMIS
Sbjct: 196 EGLRLGKQIHGYCFRNGHWSTFTNNALMTMYANLGRLDDAKFLFKLFEDRNLISWNTMIS 255

Query: 186 SLVQNDQISEAV 221
           S  QN++  EA+
Sbjct: 256 SFSQNERFVEAL 267


>ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355483916|gb|AES65119.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 874

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 47/77 (61%), Positives = 60/77 (77%)
 Frame = +3

Query: 9   GIRLGKEVHGYSLRVGDLRTFTNNALMTMYAKLGRVDYSLALFKMFENRDMVSWNTMISS 188
           G+ LGK+VH + LR GD RTFTNNAL+TMYAKLGRV  +  LF +F+++D+VSWNT+ISS
Sbjct: 202 GLLLGKQVHAFVLRNGDWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISS 261

Query: 189 LVQNDQISEAVKLFGVM 239
           L QND+  EA+    VM
Sbjct: 262 LSQNDRFEEALLYLHVM 278



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = +3

Query: 6   EGIRLGKEVHGYSLRVGD-LRTFTNNALMTMYAKLGRVDYSLALFKMFENRDMVSWNTMI 182
           + + LGK++H +  + G  L T   N+L+ MY K G +D +  +F    NRD VSWN+MI
Sbjct: 99  QDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMI 158

Query: 183 SSLVQNDQISEAVKLFGVM 239
           ++  + ++   AV LF +M
Sbjct: 159 NAACRFEEWELAVHLFRLM 177