BLASTX nr result
ID: Coptis23_contig00042545
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00042545
(327 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat... 96 3e-18
ref|XP_002526706.1| pentatricopeptide repeat-containing protein,... 93 2e-17
ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat... 92 6e-17
ref|XP_002309169.1| predicted protein [Populus trichocarpa] gi|2... 90 2e-16
ref|NP_187008.1| pentatricopeptide repeat-containing protein [Ar... 89 3e-16
>ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 95.9 bits (237), Expect = 3e-18
Identities = 44/105 (41%), Positives = 69/105 (65%)
Frame = -1
Query: 315 NSLIKDLVQKCHFSEALEHYTDRWNAGFRPDNFTYPYILKATTQLKDQTMGHLIHNTVIK 136
N++I+ LV F +A+E Y + GF P+NFT+P++LKA +L D +G IH V+K
Sbjct: 81 NTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVK 140
Query: 135 TGFESNLFVANSLILFYGQLGKLESIRFLFDEMPVRNIVTWTAVI 1
GF+ ++FV SL+ Y + G LE +FD++P +N+V+WTA+I
Sbjct: 141 GGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAII 185
Score = 72.0 bits (175), Expect = 5e-11
Identities = 37/107 (34%), Positives = 57/107 (53%)
Frame = -1
Query: 321 SINSLIKDLVQKCHFSEALEHYTDRWNAGFRPDNFTYPYILKATTQLKDQTMGHLIHNTV 142
S ++I + F EA++ + PD+FT +L A TQL D G IH +
Sbjct: 180 SWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCI 239
Query: 141 IKTGFESNLFVANSLILFYGQLGKLESIRFLFDEMPVRNIVTWTAVI 1
++ G N+FV SL+ Y + G +E R +FD MP ++IV+W A+I
Sbjct: 240 MEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMI 286
>ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223534006|gb|EEF35728.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 461
Score = 93.2 bits (230), Expect = 2e-17
Identities = 42/105 (40%), Positives = 67/105 (63%)
Frame = -1
Query: 315 NSLIKDLVQKCHFSEALEHYTDRWNAGFRPDNFTYPYILKATTQLKDQTMGHLIHNTVIK 136
N++I+ LV F+E++E Y GF P+NFT+P+++KA +L D +G ++H V+K
Sbjct: 83 NTMIRGLVSSDCFTESIEFYYSMRKKGFLPNNFTFPFVIKACARLLDFQLGIMMHTLVVK 142
Query: 135 TGFESNLFVANSLILFYGQLGKLESIRFLFDEMPVRNIVTWTAVI 1
GF+ NLFV SL+ Y + G ++ + D +P NIV+WTA+I
Sbjct: 143 LGFDCNLFVNTSLVSLYAKCGSIDDALKMLDLIPESNIVSWTAII 187
Score = 65.1 bits (157), Expect = 6e-09
Identities = 35/107 (32%), Positives = 55/107 (51%)
Frame = -1
Query: 321 SINSLIKDLVQKCHFSEALEHYTDRWNAGFRPDNFTYPYILKATTQLKDQTMGHLIHNTV 142
S ++I + + EA++ + G RPD+FT +L A Q+ D G I +
Sbjct: 182 SWTAIISGYIGVGKYREAIDLFRRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRYI 241
Query: 141 IKTGFESNLFVANSLILFYGQLGKLESIRFLFDEMPVRNIVTWTAVI 1
+ N+FV SL+ Y + G +E R LFD M R+IV+W+A+I
Sbjct: 242 TENVMARNVFVTTSLVDLYAKHGNMEKARCLFDGMAERDIVSWSAMI 288
>ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 91.7 bits (226), Expect = 6e-17
Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Frame = -1
Query: 315 NSLIKDLVQKCHFSEALEHYTDRWNAGFRPDNFTYPYILKATTQLKDQT-MGHLIHNTVI 139
N+LI+ +V F +A+ Y GF PDNFT+P++LKA T+L +G +H+ VI
Sbjct: 70 NTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVI 129
Query: 138 KTGFESNLFVANSLILFYGQLGKLESIRFLFDEMPVRNIVTWTAVI 1
KTGF+ ++FV L+ Y + G L R +FDE+P +N+V+WTA+I
Sbjct: 130 KTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAII 175
Score = 63.9 bits (154), Expect = 1e-08
Identities = 36/107 (33%), Positives = 58/107 (54%)
Frame = -1
Query: 321 SINSLIKDLVQKCHFSEALEHYTDRWNAGFRPDNFTYPYILKATTQLKDQTMGHLIHNTV 142
S ++I ++ F EAL + G RPD+FT IL A +++ D G I +
Sbjct: 170 SWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYM 229
Query: 141 IKTGFESNLFVANSLILFYGQLGKLESIRFLFDEMPVRNIVTWTAVI 1
++G N+FVA SL+ Y + G +E R +FD M +++V W+A+I
Sbjct: 230 RESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALI 276
>ref|XP_002309169.1| predicted protein [Populus trichocarpa] gi|222855145|gb|EEE92692.1|
predicted protein [Populus trichocarpa]
Length = 619
Score = 89.7 bits (221), Expect = 2e-16
Identities = 41/105 (39%), Positives = 65/105 (61%)
Frame = -1
Query: 315 NSLIKDLVQKCHFSEALEHYTDRWNAGFRPDNFTYPYILKATTQLKDQTMGHLIHNTVIK 136
N++I LV F E++E Y G PD+FT+P++LKA +L D +G +H V+K
Sbjct: 77 NTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVK 136
Query: 135 TGFESNLFVANSLILFYGQLGKLESIRFLFDEMPVRNIVTWTAVI 1
G ES+ FV SL+ YG+ G +++ +FD++P +N+ WTA+I
Sbjct: 137 AGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAII 181
>ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g03580 gi|6091764|gb|AAF03474.1|AC009327_13
hypothetical protein [Arabidopsis thaliana]
gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis
thaliana] gi|29824355|gb|AAP04138.1| unknown protein
[Arabidopsis thaliana] gi|332640438|gb|AEE73959.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 882
Score = 89.4 bits (220), Expect = 3e-16
Identities = 43/105 (40%), Positives = 66/105 (62%)
Frame = -1
Query: 315 NSLIKDLVQKCHFSEALEHYTDRWNAGFRPDNFTYPYILKATTQLKDQTMGHLIHNTVIK 136
NS+I+ + F EALE Y + PD +T+P ++KA L D MG L++ ++
Sbjct: 75 NSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILD 134
Query: 135 TGFESNLFVANSLILFYGQLGKLESIRFLFDEMPVRNIVTWTAVI 1
GFES+LFV N+L+ Y ++G L R +FDEMPVR++V+W ++I
Sbjct: 135 MGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLI 179
Score = 58.2 bits (139), Expect = 7e-07
Identities = 36/107 (33%), Positives = 54/107 (50%)
Frame = -1
Query: 321 SINSLIKDLVQKCHFSEALEHYTDRWNAGFRPDNFTYPYILKATTQLKDQTMGHLIHNTV 142
S NSLI ++ EALE Y + N+ PD+FT +L A L G +H
Sbjct: 174 SWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFA 233
Query: 141 IKTGFESNLFVANSLILFYGQLGKLESIRFLFDEMPVRNIVTWTAVI 1
+K+G S + V N L+ Y + + R +FDEM VR+ V++ +I
Sbjct: 234 LKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMI 280
Score = 57.0 bits (136), Expect = 2e-06
Identities = 33/105 (31%), Positives = 55/105 (52%)
Frame = -1
Query: 315 NSLIKDLVQKCHFSEALEHYTDRWNAGFRPDNFTYPYILKATTQLKDQTMGHLIHNTVIK 136
N++I V+ F+ L+ T + PD T+ L L + +G IH +++
Sbjct: 478 NTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR 537
Query: 135 TGFESNLFVANSLILFYGQLGKLESIRFLFDEMPVRNIVTWTAVI 1
G+ES L + N+LI Y + G LE+ +F+ M R++VTWT +I
Sbjct: 538 FGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMI 582