BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042530
         (421 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003538834.1| PREDICTED: pentatricopeptide repeat-containi...   207   7e-52
ref|XP_003611888.1| Pentatricopeptide repeat-containing protein ...   204   6e-51
ref|XP_002533281.1| pentatricopeptide repeat-containing protein,...   204   8e-51
emb|CBI17585.3| unnamed protein product [Vitis vinifera]              202   2e-50
ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containi...   202   2e-50

>ref|XP_003538834.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66631-like [Glycine max]
          Length = 658

 Score =  207 bits (527), Expect = 7e-52
 Identities = 102/139 (73%), Positives = 120/139 (86%)
 Frame = -3

Query: 419 MILSGIIPDIQTFSGLMQYFAFEGDLKTVQKLFGIVRQSGIEPDAYMFQVLIRAYCKRER 240
           MIL+GI PDIQTFSGLM YF+  GD+KTVQKLF +VRQSG+EPDAY+F+ LI+ YCK ER
Sbjct: 518 MILNGICPDIQTFSGLMYYFSQLGDIKTVQKLFAMVRQSGLEPDAYLFKALIQGYCKSER 577

Query: 239 AALAVRIYEDMRNSNLIPDSATKALLVKSLWKEGKLREAAYVEEISEDINDMLPPALPGH 60
           AALA R++EDM+NS L+PDSATK LLVKSLWKEG+ REAA VEE  E+IN +LP AL GH
Sbjct: 578 AALAWRLFEDMKNSGLVPDSATKELLVKSLWKEGRRREAAAVEESYEEINTVLPLALQGH 637

Query: 59  LWTVSAADLKRVYDIYSNS 3
           +WTVS+ADL RVY+IYSNS
Sbjct: 638 VWTVSSADLTRVYNIYSNS 656


>ref|XP_003611888.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513223|gb|AES94846.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 659

 Score =  204 bits (519), Expect = 6e-51
 Identities = 100/139 (71%), Positives = 118/139 (84%)
 Frame = -3

Query: 419 MILSGIIPDIQTFSGLMQYFAFEGDLKTVQKLFGIVRQSGIEPDAYMFQVLIRAYCKRER 240
           MIL+GI PDIQTFSGLMQYF+  GD+KTVQKLF +VRQSG EPDAY+++VLI  YCK  R
Sbjct: 515 MILNGICPDIQTFSGLMQYFSQLGDIKTVQKLFSMVRQSGFEPDAYLYKVLIEGYCKSTR 574

Query: 239 AALAVRIYEDMRNSNLIPDSATKALLVKSLWKEGKLREAAYVEEISEDINDMLPPALPGH 60
           AALA R++EDM+NS  +PDSATK LLVKSLWKEG+ REAA VEE  E++N +LP  LPGH
Sbjct: 575 AALAWRLFEDMKNSGSMPDSATKELLVKSLWKEGRRREAAAVEESCEEVNVVLPLGLPGH 634

Query: 59  LWTVSAADLKRVYDIYSNS 3
           +WTVS+ADL RVY+IYSNS
Sbjct: 635 VWTVSSADLTRVYNIYSNS 653


>ref|XP_002533281.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526906|gb|EEF29113.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 652

 Score =  204 bits (518), Expect = 8e-51
 Identities = 99/139 (71%), Positives = 119/139 (85%)
 Frame = -3

Query: 419 MILSGIIPDIQTFSGLMQYFAFEGDLKTVQKLFGIVRQSGIEPDAYMFQVLIRAYCKRER 240
           MIL GI PDIQT+SGLM +FA +GD+KT QKLF IVRQSG+EPDAYMF+VLI AYCK ER
Sbjct: 508 MILCGISPDIQTYSGLMYHFALQGDIKTAQKLFTIVRQSGVEPDAYMFKVLILAYCKCER 567

Query: 239 AALAVRIYEDMRNSNLIPDSATKALLVKSLWKEGKLREAAYVEEISEDINDMLPPALPGH 60
           AALA R++EDM+NSNL+PD+ATK  L+KSLWKEGK +EAA VEE  E+ N++LP  L GH
Sbjct: 568 AALAWRVFEDMKNSNLMPDTATKDFLIKSLWKEGKRKEAAIVEESCEESNNVLPLVLRGH 627

Query: 59  LWTVSAADLKRVYDIYSNS 3
           +WTVS+ADL RVY+IYSN+
Sbjct: 628 IWTVSSADLTRVYNIYSNT 646


>emb|CBI17585.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  202 bits (514), Expect = 2e-50
 Identities = 100/139 (71%), Positives = 117/139 (84%)
 Frame = -3

Query: 419 MILSGIIPDIQTFSGLMQYFAFEGDLKTVQKLFGIVRQSGIEPDAYMFQVLIRAYCKRER 240
           M L GI PD+ TFSGLM +FA EGD KTVQKLF +VRQSG+EPDAYMF+VLI  YCK ER
Sbjct: 481 MFLGGICPDVPTFSGLMYHFALEGDFKTVQKLFMMVRQSGVEPDAYMFKVLIHGYCKCER 540

Query: 239 AALAVRIYEDMRNSNLIPDSATKALLVKSLWKEGKLREAAYVEEISEDINDMLPPALPGH 60
           +ALA+R++EDMR+ NL+PD+ATK LLVK LWKEG+ REAA VEE  E+IN  LP AL GH
Sbjct: 541 SALALRVFEDMRSLNLMPDAATKNLLVKCLWKEGRRREAASVEERCEEINYGLPFALRGH 600

Query: 59  LWTVSAADLKRVYDIYSNS 3
           +WT+S+ADLKRVYDIYSNS
Sbjct: 601 MWTMSSADLKRVYDIYSNS 619


>ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66631-like [Vitis vinifera]
          Length = 660

 Score =  202 bits (514), Expect = 2e-50
 Identities = 100/139 (71%), Positives = 117/139 (84%)
 Frame = -3

Query: 419 MILSGIIPDIQTFSGLMQYFAFEGDLKTVQKLFGIVRQSGIEPDAYMFQVLIRAYCKRER 240
           M L GI PD+ TFSGLM +FA EGD KTVQKLF +VRQSG+EPDAYMF+VLI  YCK ER
Sbjct: 505 MFLGGICPDVPTFSGLMYHFALEGDFKTVQKLFMMVRQSGVEPDAYMFKVLIHGYCKCER 564

Query: 239 AALAVRIYEDMRNSNLIPDSATKALLVKSLWKEGKLREAAYVEEISEDINDMLPPALPGH 60
           +ALA+R++EDMR+ NL+PD+ATK LLVK LWKEG+ REAA VEE  E+IN  LP AL GH
Sbjct: 565 SALALRVFEDMRSLNLMPDAATKNLLVKCLWKEGRRREAASVEERCEEINYGLPFALRGH 624

Query: 59  LWTVSAADLKRVYDIYSNS 3
           +WT+S+ADLKRVYDIYSNS
Sbjct: 625 MWTMSSADLKRVYDIYSNS 643