BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00041206
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26162.3| unnamed protein product [Vitis vinifera]               73   2e-11
ref|XP_002873920.1| pentatricopeptide repeat-containing protein ...    66   3e-09
ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containi...    62   4e-08
ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containi...    61   1e-07
ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containi...    61   1e-07

>emb|CBI26162.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 38/114 (33%), Positives = 59/114 (51%)
 Frame = -1

Query: 346 SPSSIFIFLRQRFQNQPKSRNFTTAISEVNNNIVRXXXXXDKRFKDIAKQVSKTIRVQPR 167
           S SS+  FLRQ   ++ ++    +     +           +  ++I K+VS   R +PR
Sbjct: 51  SSSSVISFLRQNPNSRIRNLGVVSGNQYGDVEGAHQHTQQQQHLEEIVKRVSDITRTRPR 110

Query: 166 WEKTLLCDYPPSVLLTTHCVEQVIKSTNNALLSYRFFRWVCSTNGFTPDSRCCN 5
           WE+TLL D+P    L    +   ++   NAL+S RFF W+ S +GF+PDS  CN
Sbjct: 111 WEQTLLSDFPSFNFLDPTFLSHFVEHQKNALISLRFFHWLSSQSGFSPDSSSCN 164


>ref|XP_002873920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297319757|gb|EFH50179.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 483

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 34/117 (29%), Positives = 58/117 (49%)
 Frame = -1

Query: 355 MAKSPSSIFIFLRQRFQNQPKSRNFTTAISEVNNNIVRXXXXXDKRFKDIAKQVSKTIRV 176
           M++  S +  F R R +  P ++  +  +   ++            + ++AK VS  +R 
Sbjct: 1   MSRGQSYLINFFRNRTRQNPNAQIRSLTVESRDSESKPDEQKSAVSYTEMAKTVSTIMRQ 60

Query: 175 QPRWEKTLLCDYPPSVLLTTHCVEQVIKSTNNALLSYRFFRWVCSTNGFTPDSRCCN 5
           + RW++TL+ D+P           Q++KS NN + S  FFRW+CS   +TPDS   N
Sbjct: 61  RQRWQQTLVSDFPSFDFADPLFFRQLLKSQNNVMFSLWFFRWLCSNYDYTPDSVSLN 117


>ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Glycine max]
          Length = 577

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 28/65 (43%), Positives = 36/65 (55%)
 Frame = -1

Query: 199 QVSKTIRVQPRWEKTLLCDYPPSVLLTTHCVEQVIKSTNNALLSYRFFRWVCSTNGFTPD 20
           ++ +  R +PRWE TLL  YP             +K  NNA LS RFF W+CS+ GF+PD
Sbjct: 53  EICRITRTKPRWEDTLLSQYPSFNFKDPSFFLLYLKHQNNAFLSLRFFHWLCSSCGFSPD 112

Query: 19  SRCCN 5
              CN
Sbjct: 113 QSSCN 117


>ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 638

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/73 (41%), Positives = 39/73 (53%)
 Frame = -1

Query: 223 KRFKDIAKQVSKTIRVQPRWEKTLLCDYPPSVLLTTHCVEQVIKSTNNALLSYRFFRWVC 44
           K   +IA +V K IR +PRWE++LL DYP           +++K  NN  LS RFF W+ 
Sbjct: 91  KDVSEIAAEVGKVIRSKPRWEQSLLSDYPSFNFHDPSFFSELLKQLNNVFLSLRFFLWLS 150

Query: 43  STNGFTPDSRCCN 5
           S   F P    CN
Sbjct: 151 SQPEFLPHPVSCN 163


>ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 602

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/73 (41%), Positives = 39/73 (53%)
 Frame = -1

Query: 223 KRFKDIAKQVSKTIRVQPRWEKTLLCDYPPSVLLTTHCVEQVIKSTNNALLSYRFFRWVC 44
           K   +IA +V K IR +PRWE++LL DYP           +++K  NN  LS RFF W+ 
Sbjct: 55  KDVSEIAAEVGKVIRSKPRWEQSLLSDYPSFNFHDPSFFSELLKQLNNVFLSLRFFLWLS 114

Query: 43  STNGFTPDSRCCN 5
           S   F P    CN
Sbjct: 115 SQPEFLPHPVSCN 127