BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040279
         (424 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containi...   157   7e-37
ref|XP_004161634.1| PREDICTED: pentatricopeptide repeat-containi...   154   7e-36
ref|XP_004145397.1| PREDICTED: pentatricopeptide repeat-containi...   154   7e-36
ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containi...   151   6e-35
ref|NP_179197.1| pentatricopeptide repeat-containing protein [Ar...   141   5e-32

>ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Vitis vinifera]
          Length = 492

 Score =  157 bits (398), Expect = 7e-37
 Identities = 81/140 (57%), Positives = 99/140 (70%), Gaps = 8/140 (5%)
 Frame = +2

Query: 20  PNGFTSKQVSEITLGIKNNPRLALRFFHWTQKNSLCKHDFVSYSTIIHILARARLKTSSQ 199
           P GFT  + S+I L IKNNP LAL FF W    SLC H  +SYSTIIHILARARLK+ + 
Sbjct: 61  PKGFTPTEASQIVLQIKNNPHLALSFFLWCHHKSLCNHTLLSYSTIIHILARARLKSQAL 120

Query: 200 TLMRTSIRVYD--------PLEVFETLVKSYRYCDSAPFVFDLLVKVCLLGNKIDCAIEI 355
            L+RT+IRV+D        P ++FE+LVK+Y  C SAPFVFDLL+K CL   +I+ +I I
Sbjct: 121 GLIRTAIRVFDDSDECSSQPPKIFESLVKTYNSCGSAPFVFDLLIKACLNSKRIEQSISI 180

Query: 356 VRMLRSRGICMNITTCNMLI 415
           V+MLRSRGI   I+TCN LI
Sbjct: 181 VKMLRSRGISPTISTCNALI 200


>ref|XP_004161634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Cucumis sativus]
          Length = 499

 Score =  154 bits (389), Expect = 7e-36
 Identities = 81/152 (53%), Positives = 102/152 (67%), Gaps = 17/152 (11%)
 Frame = +2

Query: 20  PNGFTSKQVSEITLGIKNNPRLALRFFHWTQKNSLCKHDFVSYSTIIHILARARLKTSSQ 199
           PNGF   + S+I L IKNNP LALRFF WTQ  SLC H+ +SYST+IHILAR RL+T ++
Sbjct: 67  PNGFDPGEFSDILLQIKNNPHLALRFFLWTQNKSLCNHNLISYSTLIHILARGRLRTHAK 126

Query: 200 TLMRTSIRVYD-----------------PLEVFETLVKSYRYCDSAPFVFDLLVKVCLLG 328
            +++T+IR                    PL++FETLVK+Y+ C SAPFVFDLL+K  L  
Sbjct: 127 DVIQTAIRAAQLEDSDNYSKTERFSPSRPLKLFETLVKTYKRCGSAPFVFDLLIKALLDS 186

Query: 329 NKIDCAIEIVRMLRSRGICMNITTCNMLIRCV 424
            K+D +IEIVRMLRSRGI   ++T N LI  V
Sbjct: 187 KKLDSSIEIVRMLRSRGISPQVSTLNSLILLV 218


>ref|XP_004145397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Cucumis sativus]
           gi|449472579|ref|XP_004153637.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g15980-like [Cucumis sativus]
          Length = 499

 Score =  154 bits (389), Expect = 7e-36
 Identities = 81/152 (53%), Positives = 102/152 (67%), Gaps = 17/152 (11%)
 Frame = +2

Query: 20  PNGFTSKQVSEITLGIKNNPRLALRFFHWTQKNSLCKHDFVSYSTIIHILARARLKTSSQ 199
           PNGF   + S+I L IKNNP LALRFF WTQ  SLC H+ +SYST+IHILAR RL+T ++
Sbjct: 67  PNGFDPGEFSDILLQIKNNPHLALRFFLWTQNKSLCNHNLISYSTLIHILARGRLRTHAK 126

Query: 200 TLMRTSIRVYD-----------------PLEVFETLVKSYRYCDSAPFVFDLLVKVCLLG 328
            +++T+IR                    PL++FETLVK+Y+ C SAPFVFDLL+K  L  
Sbjct: 127 DVIQTAIRAAQLEDSDNYSKTERFSPSRPLKLFETLVKTYKRCGSAPFVFDLLIKALLDS 186

Query: 329 NKIDCAIEIVRMLRSRGICMNITTCNMLIRCV 424
            K+D +IEIVRMLRSRGI   ++T N LI  V
Sbjct: 187 KKLDSSIEIVRMLRSRGISPQVSTLNSLILLV 218


>ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Glycine max]
          Length = 487

 Score =  151 bits (381), Expect = 6e-35
 Identities = 81/144 (56%), Positives = 98/144 (68%), Gaps = 12/144 (8%)
 Frame = +2

Query: 20  PNGFTSKQVSEITLGIKNNPRLALRFFHWTQKNSLCKHDFVSYSTIIHILARARLKTSSQ 199
           PNG T  + SEITL IKN P+LALRFF WT+  SLC H+  SYS+IIH+LARARL + + 
Sbjct: 59  PNGITPAEFSEITLHIKNKPQLALRFFLWTKSKSLCNHNLASYSSIIHLLARARLSSHAY 118

Query: 200 TLMRTSIRVYD------------PLEVFETLVKSYRYCDSAPFVFDLLVKVCLLGNKIDC 343
            L+RT+IR               PL +FETLVK+YR   SAPFVFDLL+K CL   K+D 
Sbjct: 119 DLIRTAIRASHQNDEENCRFNSRPLNLFETLVKTYRDSGSAPFVFDLLIKACLDSKKLDP 178

Query: 344 AIEIVRMLRSRGICMNITTCNMLI 415
           +IEIVRML SRGI   ++T N LI
Sbjct: 179 SIEIVRMLLSRGISPKVSTLNSLI 202


>ref|NP_179197.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75267579|sp|Q9XIM8.1|PP155_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g15980 gi|5306237|gb|AAD41970.1| hypothetical protein
           [Arabidopsis thaliana] gi|330251359|gb|AEC06453.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 498

 Score =  141 bits (356), Expect = 5e-32
 Identities = 73/141 (51%), Positives = 100/141 (70%), Gaps = 7/141 (4%)
 Frame = +2

Query: 14  VNPNGFTSKQVSEITLGIKNNPRLALRFFHWTQKNSLCKHDFVSYSTIIHILARARLKTS 193
           + P+GFT  Q SEITL ++NNP L+LRFF +T++ SLC HD  S ST+IHIL+R+RLK+ 
Sbjct: 64  LQPSGFTPSQFSEITLCLRNNPHLSLRFFLFTRRYSLCSHDTHSCSTLIHILSRSRLKSH 123

Query: 194 SQTLMRTSIRVYDP-------LEVFETLVKSYRYCDSAPFVFDLLVKVCLLGNKIDCAIE 352
           +  ++R ++R+          L+VF +L+KSY  C SAPFVFDLL+K CL   +ID A+ 
Sbjct: 124 ASEIIRLALRLAATDEDEDRVLKVFRSLIKSYNRCGSAPFVFDLLIKSCLDSKEIDGAVM 183

Query: 353 IVRMLRSRGICMNITTCNMLI 415
           ++R LRSRGI   I+TCN LI
Sbjct: 184 VMRKLRSRGINAQISTCNALI 204