BLASTX nr result
ID: Coptis23_contig00040257
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00040257
(334 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat... 116 3e-38
ref|XP_002309169.1| predicted protein [Populus trichocarpa] gi|2... 114 1e-32
ref|XP_002323645.1| predicted protein [Populus trichocarpa] gi|2... 106 4e-30
ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat... 100 2e-29
ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat... 100 2e-29
>ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 116 bits (291), Expect(2) = 3e-38
Identities = 50/69 (72%), Positives = 63/69 (91%)
Frame = +2
Query: 128 NPILGTALIDMYAKCGSITRAWRTFQGMMERDLVLWNAVISGLAMNGHVKSAFGLFAQME 307
NP+LGTALID+YAKCGS++RAW F+GM E+D V+WNA+ISGLAMNG+VK +FGLF Q+E
Sbjct: 348 NPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVE 407
Query: 308 KMGIRPDGN 334
K+GI+PDGN
Sbjct: 408 KLGIKPDGN 416
Score = 67.0 bits (162), Expect(2) = 3e-38
Identities = 30/40 (75%), Positives = 35/40 (87%)
Frame = +3
Query: 3 QRDKVKPDCFTFVGVLSACARLGALELGEKFSGLIDKNNY 122
QR+ VKPDC+T VGVLSACARLGALELGE SGL+D+N +
Sbjct: 306 QRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEF 345
Score = 76.3 bits (186), Expect(2) = 6e-16
Identities = 33/67 (49%), Positives = 47/67 (70%)
Frame = +2
Query: 128 NPILGTALIDMYAKCGSITRAWRTFQGMMERDLVLWNAVISGLAMNGHVKSAFGLFAQME 307
N +GT+L+DMYAKCG++ +A F GM E+D+V W A+I G A+NG K A LF QM+
Sbjct: 247 NVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQ 306
Query: 308 KMGIRPD 328
+ ++PD
Sbjct: 307 RENVKPD 313
Score = 32.3 bits (72), Expect(2) = 6e-16
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3
Query: 21 PDCFTFVGVLSACARLGALELGE 89
PD FT V VLSAC +LG L GE
Sbjct: 211 PDSFTIVRVLSACTQLGDLNSGE 233
Score = 49.3 bits (116), Expect(2) = 4e-08
Identities = 21/62 (33%), Positives = 38/62 (61%)
Frame = +2
Query: 143 TALIDMYAKCGSITRAWRTFQGMMERDLVLWNAVISGLAMNGHVKSAFGLFAQMEKMGIR 322
T+L+ +YAKCG + A + F + ++++V W A+ISG G + A +F ++ +M +
Sbjct: 151 TSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLA 210
Query: 323 PD 328
PD
Sbjct: 211 PD 212
Score = 32.7 bits (73), Expect(2) = 4e-08
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 21 PDCFTFVGVLSACARLGALELGEKFSGLIDKNNY 122
P+ FTF VL ACARL L+LG K L+ K +
Sbjct: 110 PNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGF 143
>ref|XP_002309169.1| predicted protein [Populus trichocarpa] gi|222855145|gb|EEE92692.1|
predicted protein [Populus trichocarpa]
Length = 619
Score = 114 bits (284), Expect(2) = 1e-32
Identities = 50/69 (72%), Positives = 59/69 (85%)
Frame = +2
Query: 128 NPILGTALIDMYAKCGSITRAWRTFQGMMERDLVLWNAVISGLAMNGHVKSAFGLFAQME 307
NP+LGTALIDMYAKCG + AW F+GM ++D+V+WNA ISGLAM+GHVK+AFGLF QME
Sbjct: 281 NPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQME 340
Query: 308 KMGIRPDGN 334
K GI PDGN
Sbjct: 341 KSGIEPDGN 349
Score = 50.8 bits (120), Expect(2) = 1e-32
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +3
Query: 18 KPDCFTFVGVLSACARLGALELGEKFSGLIDKNNY 122
+PDC+ VGVL ACARLGALELG S L+D+N +
Sbjct: 244 RPDCYAMVGVLCACARLGALELGNWASNLMDRNEF 278
Score = 47.8 bits (112), Expect(2) = 3e-08
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 38/102 (37%)
Frame = +2
Query: 137 LGTALIDMYAKCGSITRAWR--------------------------------------TF 202
+ T+L+ +Y KCG I A++ F
Sbjct: 145 VNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVF 204
Query: 203 QGMMERDLVLWNAVISGLAMNGHVKSAFGLFAQMEKMGIRPD 328
GM+E+D+V W+++I G A NG K A LF +M G RPD
Sbjct: 205 DGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPD 246
Score = 34.7 bits (78), Expect(2) = 3e-08
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +3
Query: 3 QRDKVKPDCFTFVGVLSACARLGALELGEKFSGLIDK 113
+++ + PD FTF +L ACARL +LG K GL+ K
Sbjct: 100 RKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVK 136
>ref|XP_002323645.1| predicted protein [Populus trichocarpa] gi|222868275|gb|EEF05406.1|
predicted protein [Populus trichocarpa]
Length = 682
Score = 106 bits (265), Expect(2) = 4e-30
Identities = 48/69 (69%), Positives = 56/69 (81%)
Frame = +2
Query: 128 NPILGTALIDMYAKCGSITRAWRTFQGMMERDLVLWNAVISGLAMNGHVKSAFGLFAQME 307
N +LGTALIDMYAKCG + RAW F+GM ++D V+WNA ISGLAM+GHVK A GLF QME
Sbjct: 344 NSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQME 403
Query: 308 KMGIRPDGN 334
K GI+PD N
Sbjct: 404 KSGIKPDRN 412
Score = 49.7 bits (117), Expect(2) = 4e-30
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +3
Query: 15 VKPDCFTFVGVLSACARLGALELGEKFSGLIDKNNY 122
+KPDC+ VGVL +CARLGALELG+ S LI+ N +
Sbjct: 306 LKPDCYAMVGVLCSCARLGALELGDWASNLINGNEF 341
Score = 68.2 bits (165), Expect = 7e-10
Identities = 44/107 (41%), Positives = 60/107 (56%), Gaps = 9/107 (8%)
Frame = +2
Query: 35 LRWSSFSLCKVRSAGIR------GEV*WFD**---K*LSVNPILGTALIDMYAKCGSITR 187
LR SFSL +V SA R GE W D + N + TAL+D Y KCG++ R
Sbjct: 205 LRPDSFSLVEVLSACKRTGDLRSGE--WIDEYITENGMVRNVFVATALVDFYGKCGNMER 262
Query: 188 AWRTFQGMMERDLVLWNAVISGLAMNGHVKSAFGLFAQMEKMGIRPD 328
A F GM+E+++V W+++I G A NG K A LF +M G++PD
Sbjct: 263 ARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPD 309
Score = 52.4 bits (124), Expect(2) = 2e-09
Identities = 22/61 (36%), Positives = 37/61 (60%)
Frame = +2
Query: 146 ALIDMYAKCGSITRAWRTFQGMMERDLVLWNAVISGLAMNGHVKSAFGLFAQMEKMGIRP 325
+LI++Y KCG I A++ F + +++ W A ISG G + A +F ++ +MG+RP
Sbjct: 148 SLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRP 207
Query: 326 D 328
D
Sbjct: 208 D 208
Score = 34.3 bits (77), Expect(2) = 2e-09
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 3 QRDKVKPDCFTFVGVLSACARLGALELGEKFSGLIDK 113
+++ + PD FTF VL ACAR+ ELG K L+ K
Sbjct: 100 RKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVK 136
>ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 100 bits (249), Expect(2) = 2e-29
Identities = 43/69 (62%), Positives = 56/69 (81%)
Frame = +2
Query: 128 NPILGTALIDMYAKCGSITRAWRTFQGMMERDLVLWNAVISGLAMNGHVKSAFGLFAQME 307
NP+LGTALIDMY+KCGS+T+AW F M ++D V+WNA++ GL+MNGH K+ F LF+ +E
Sbjct: 350 NPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVE 409
Query: 308 KMGIRPDGN 334
K GIRPD N
Sbjct: 410 KHGIRPDEN 418
Score = 53.9 bits (128), Expect(2) = 2e-29
Identities = 24/40 (60%), Positives = 31/40 (77%)
Frame = +3
Query: 3 QRDKVKPDCFTFVGVLSACARLGALELGEKFSGLIDKNNY 122
Q + +KPDC+T VGVLSACA LGAL+LG S L+D+N +
Sbjct: 308 QSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEF 347
Score = 66.2 bits (160), Expect = 3e-09
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 9/107 (8%)
Frame = +2
Query: 35 LRWSSFSLCKVRSAGIR------GEV*WFD**---K*LSVNPILGTALIDMYAKCGSITR 187
L+ SFSL KV +A R GE W D + N + T+L+DMY KCG++ R
Sbjct: 211 LKPDSFSLVKVLAACARLGDCTSGE--WIDRYISDSGMGRNVFVATSLLDMYVKCGNLER 268
Query: 188 AWRTFQGMMERDLVLWNAVISGLAMNGHVKSAFGLFAQMEKMGIRPD 328
A F M E+D+V W+ +I G A NG + A LF QM+ ++PD
Sbjct: 269 ANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPD 315
Score = 55.8 bits (133), Expect = 3e-06
Identities = 21/62 (33%), Positives = 40/62 (64%)
Frame = +2
Query: 143 TALIDMYAKCGSITRAWRTFQGMMERDLVLWNAVISGLAMNGHVKSAFGLFAQMEKMGIR 322
T+L+ +Y KC + A + F + ++++V W A+I+G +GH + A G F ++ +MG++
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212
Query: 323 PD 328
PD
Sbjct: 213 PD 214
>ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 100 bits (248), Expect(2) = 2e-29
Identities = 43/69 (62%), Positives = 55/69 (79%)
Frame = +2
Query: 128 NPILGTALIDMYAKCGSITRAWRTFQGMMERDLVLWNAVISGLAMNGHVKSAFGLFAQME 307
NP+LGTALIDMY+KCGS+T+AW F M +D V+WNA++ GL+MNGH K+ F LF+ +E
Sbjct: 350 NPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVE 409
Query: 308 KMGIRPDGN 334
K GIRPD N
Sbjct: 410 KHGIRPDEN 418
Score = 53.9 bits (128), Expect(2) = 2e-29
Identities = 24/40 (60%), Positives = 31/40 (77%)
Frame = +3
Query: 3 QRDKVKPDCFTFVGVLSACARLGALELGEKFSGLIDKNNY 122
Q + +KPDC+T VGVLSACA LGAL+LG S L+D+N +
Sbjct: 308 QSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEF 347
Score = 66.2 bits (160), Expect = 3e-09
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 9/107 (8%)
Frame = +2
Query: 35 LRWSSFSLCKVRSAGIR------GEV*WFD**---K*LSVNPILGTALIDMYAKCGSITR 187
L+ SFSL KV +A R GE W D + N + T+L+DMY KCG++ R
Sbjct: 211 LKPDSFSLVKVLAACARLGDCTSGE--WIDRYISDSGMGRNVFVATSLLDMYVKCGNLER 268
Query: 188 AWRTFQGMMERDLVLWNAVISGLAMNGHVKSAFGLFAQMEKMGIRPD 328
A F M E+D+V W+ +I G A NG + A LF QM+ ++PD
Sbjct: 269 ANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPD 315
Score = 55.8 bits (133), Expect = 3e-06
Identities = 21/62 (33%), Positives = 40/62 (64%)
Frame = +2
Query: 143 TALIDMYAKCGSITRAWRTFQGMMERDLVLWNAVISGLAMNGHVKSAFGLFAQMEKMGIR 322
T+L+ +Y KC + A + F + ++++V W A+I+G +GH + A G F ++ +MG++
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212
Query: 323 PD 328
PD
Sbjct: 213 PD 214