BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040245
         (280 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN70487.1| hypothetical protein VITISV_008663 [Vitis vinifera]   114   6e-24
ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containi...   114   8e-24
ref|XP_002515415.1| pentatricopeptide repeat-containing protein,...   113   2e-23
ref|XP_002309680.1| predicted protein [Populus trichocarpa] gi|2...   108   3e-22
ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   107   1e-21

>emb|CAN70487.1| hypothetical protein VITISV_008663 [Vitis vinifera]
          Length = 1302

 Score =  114 bits (286), Expect = 6e-24
 Identities = 54/85 (63%), Positives = 63/85 (74%)
 Frame = -2

Query: 276  AALNFFEDMNTTGLSPDDITFIGLLSACSHVGMVEEGCLLFKSMVNTFGVSPKLEHYSCM 97
            AA+   + M   G+ PD+ITFIGLLSACSH  +V+EGC LF  M   FG+ PKLEHY CM
Sbjct: 1117 AAVKLLDKMRDNGIRPDEITFIGLLSACSHGSLVQEGCRLFDCMEKEFGLPPKLEHYGCM 1176

Query: 96   VDLLGRAGFLKNAFRLIETMPFEHG 22
            VDLLGRAGFL  AF+LI+ MPFE G
Sbjct: 1177 VDLLGRAGFLDPAFQLIKAMPFEPG 1201


>ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 517

 Score =  114 bits (285), Expect = 8e-24
 Identities = 54/85 (63%), Positives = 63/85 (74%)
 Frame = -2

Query: 276 AALNFFEDMNTTGLSPDDITFIGLLSACSHVGMVEEGCLLFKSMVNTFGVSPKLEHYSCM 97
           AA+   + M   G+ PD+ITFIGLLSACSH  +V+EGC LF  M   FG+ PKLEHY CM
Sbjct: 332 AAVKLLDKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCMEKEFGLPPKLEHYGCM 391

Query: 96  VDLLGRAGFLKNAFRLIETMPFEHG 22
           VDLLGRAGFL  AF+LI+ MPFE G
Sbjct: 392 VDLLGRAGFLDPAFQLIKAMPFEPG 416


>ref|XP_002515415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545359|gb|EEF46864.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 507

 Score =  113 bits (282), Expect = 2e-23
 Identities = 53/85 (62%), Positives = 64/85 (75%)
 Frame = -2

Query: 276 AALNFFEDMNTTGLSPDDITFIGLLSACSHVGMVEEGCLLFKSMVNTFGVSPKLEHYSCM 97
           AAL  F  M    + PDDITFIG+++ACSH G+V+EGC LF SM   FG+SPKLEHY CM
Sbjct: 328 AALKVFGKMRKNHIQPDDITFIGIINACSHSGLVQEGCQLFVSMQEDFGISPKLEHYGCM 387

Query: 96  VDLLGRAGFLKNAFRLIETMPFEHG 22
           V+LLGR+G L  A ++IETMPFE G
Sbjct: 388 VNLLGRSGHLALALQVIETMPFEPG 412


>ref|XP_002309680.1| predicted protein [Populus trichocarpa] gi|222855656|gb|EEE93203.1|
           predicted protein [Populus trichocarpa]
          Length = 500

 Score =  108 bits (271), Expect = 3e-22
 Identities = 54/85 (63%), Positives = 61/85 (71%)
 Frame = -2

Query: 276 AALNFFEDMNTTGLSPDDITFIGLLSACSHVGMVEEGCLLFKSMVNTFGVSPKLEHYSCM 97
           AALN F  M      PDDITFIGLLSACSH G+V+EG  LF SM   FG+SPK+EHY CM
Sbjct: 328 AALNIFNKMRKNHTRPDDITFIGLLSACSHSGLVQEGSQLFYSMQKEFGISPKIEHYGCM 387

Query: 96  VDLLGRAGFLKNAFRLIETMPFEHG 22
           VDLL RA  L  A +LI+TMPF+ G
Sbjct: 388 VDLLSRARHLDCALQLIKTMPFKPG 412


>ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  107 bits (267), Expect = 1e-21
 Identities = 49/83 (59%), Positives = 66/83 (79%)
 Frame = -2

Query: 276 AALNFFEDMNTTGLSPDDITFIGLLSACSHVGMVEEGCLLFKSMVNTFGVSPKLEHYSCM 97
           AA+++F +M + GL PD+ITFIG+LSAC H G+V++G   F  M + +G+SPKL+HYSC+
Sbjct: 472 AAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCL 531

Query: 96  VDLLGRAGFLKNAFRLIETMPFE 28
           VDLLGRAGFL+ A  LI +MPFE
Sbjct: 532 VDLLGRAGFLEEAEELIRSMPFE 554