BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00040086
         (237 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002313400.1| predicted protein [Populus trichocarpa] gi|2...   118   6e-25
ref|XP_002279903.2| PREDICTED: helicase SKI2W-like [Vitis vinifera]   117   1e-24
emb|CBI16013.3| unnamed protein product [Vitis vinifera]              117   1e-24
ref|XP_002520439.1| helicase, putative [Ricinus communis] gi|223...   111   5e-23
ref|NP_190280.5| antiviral helicase SKI2 [Arabidopsis thaliana] ...   110   2e-22

>ref|XP_002313400.1| predicted protein [Populus trichocarpa] gi|222849808|gb|EEE87355.1|
           predicted protein [Populus trichocarpa]
          Length = 943

 Score =  118 bits (295), Expect = 6e-25
 Identities = 57/78 (73%), Positives = 65/78 (83%)
 Frame = -3

Query: 235 IKIDQGQLLEDGSNAAYSKTVQQLLGQISGGNKYPPALDPISDLKLKDMLLVEAYNKWNS 56
           I IDQ +LLEDGSNAA+SKTVQQLL   S GNKYPPALDP+ +LKLKD+ LVEAY+KW S
Sbjct: 638 ITIDQVRLLEDGSNAAFSKTVQQLLETKSDGNKYPPALDPLKELKLKDVNLVEAYHKWTS 697

Query: 55  ILQKMVENKCHSCPKLKE 2
           +LQKM  NKCH C KL+E
Sbjct: 698 LLQKMASNKCHGCIKLEE 715


>ref|XP_002279903.2| PREDICTED: helicase SKI2W-like [Vitis vinifera]
          Length = 1379

 Score =  117 bits (292), Expect = 1e-24
 Identities = 57/78 (73%), Positives = 63/78 (80%)
 Frame = -3

Query: 235  IKIDQGQLLEDGSNAAYSKTVQQLLGQISGGNKYPPALDPISDLKLKDMLLVEAYNKWNS 56
            IKID   LLED +NAAYSKTVQQLL   S G+KYPPALDP+ DLKLKDM LVE Y KWNS
Sbjct: 1074 IKIDPVGLLEDANNAAYSKTVQQLLELKSKGHKYPPALDPLKDLKLKDMTLVETYYKWNS 1133

Query: 55   ILQKMVENKCHSCPKLKE 2
            +LQKM +NKCH C KL+E
Sbjct: 1134 LLQKMADNKCHECVKLEE 1151


>emb|CBI16013.3| unnamed protein product [Vitis vinifera]
          Length = 1082

 Score =  117 bits (292), Expect = 1e-24
 Identities = 57/78 (73%), Positives = 63/78 (80%)
 Frame = -3

Query: 235  IKIDQGQLLEDGSNAAYSKTVQQLLGQISGGNKYPPALDPISDLKLKDMLLVEAYNKWNS 56
            IKID   LLED +NAAYSKTVQQLL   S G+KYPPALDP+ DLKLKDM LVE Y KWNS
Sbjct: 777  IKIDPVGLLEDANNAAYSKTVQQLLELKSKGHKYPPALDPLKDLKLKDMTLVETYYKWNS 836

Query: 55   ILQKMVENKCHSCPKLKE 2
            +LQKM +NKCH C KL+E
Sbjct: 837  LLQKMADNKCHECVKLEE 854


>ref|XP_002520439.1| helicase, putative [Ricinus communis] gi|223540281|gb|EEF41852.1|
            helicase, putative [Ricinus communis]
          Length = 1335

 Score =  111 bits (278), Expect = 5e-23
 Identities = 54/78 (69%), Positives = 62/78 (79%)
 Frame = -3

Query: 235  IKIDQGQLLEDGSNAAYSKTVQQLLGQISGGNKYPPALDPISDLKLKDMLLVEAYNKWNS 56
            +KIDQ  LLED SN A+SKTVQQL    S GNKYPPALDP++DLK+KD+ LVEAY KW S
Sbjct: 1030 LKIDQVGLLEDVSNTAFSKTVQQLSELKSDGNKYPPALDPLTDLKMKDVNLVEAYKKWTS 1089

Query: 55   ILQKMVENKCHSCPKLKE 2
            +LQKM  NKCH C KL+E
Sbjct: 1090 LLQKMARNKCHGCIKLEE 1107


>ref|NP_190280.5| antiviral helicase SKI2 [Arabidopsis thaliana]
            gi|332644703|gb|AEE78224.1| antiviral helicase SKI2
            [Arabidopsis thaliana]
          Length = 1347

 Score =  110 bits (274), Expect = 2e-22
 Identities = 53/78 (67%), Positives = 62/78 (79%)
 Frame = -3

Query: 235  IKIDQGQLLEDGSNAAYSKTVQQLLGQISGGNKYPPALDPISDLKLKDMLLVEAYNKWNS 56
            IKIDQ +LLEDG+ AA+S+TVQQLL   S GNK+PPALDP+ DLKLKD  LVE Y KW +
Sbjct: 1042 IKIDQVRLLEDGNKAAFSQTVQQLLDLKSDGNKFPPALDPVKDLKLKDAELVETYYKWTN 1101

Query: 55   ILQKMVENKCHSCPKLKE 2
            +LQKM  NKCH C KL+E
Sbjct: 1102 LLQKMSMNKCHGCVKLEE 1119