BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038457
         (471 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   105   4e-21
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   100   9e-20
ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|2...   100   2e-19
ref|XP_002319850.1| predicted protein [Populus trichocarpa] gi|2...    99   5e-19
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    97   2e-18

>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  105 bits (262), Expect = 4e-21
 Identities = 61/152 (40%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
 Frame = +2

Query: 2   RHQVWSELRDIAPLVPGPWLLFGDFNAITSLDEKIGGNLDFSQSMLDFNLLINDLGLMDL 181
           +H  WS LR +      P L FGDFN ITS++EK GG     + M  F  +I+D  + DL
Sbjct: 114 KHLTWSLLRRLKQQCSLPVLFFGDFNEITSIEEKEGGAPRCERVMDAFREVIDDCAVKDL 173

Query: 182 GYKGPRFTWSNCRRFKDHVGERLGRALATTEWVAAFPNMIVKTLAFGTSDHLVLLI--NL 355
           GY G RFTW         + ERL R LA  EW   FP+  V  L    SDH  LL+   +
Sbjct: 174 GYVGNRFTWQRGNSPSTLIRERLDRMLANDEWCDNFPSWEVVHLPRYRSDHAPLLLKTGV 233

Query: 356 SASVENNSKPFRFFEMWLQNNSCLPVIEKAWN 451
           + S    +K F+F  MWL    C  ++E+AWN
Sbjct: 234 NDSFRRGNKLFKFEAMWLSKEECGKIVEEAWN 265


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  100 bits (250), Expect = 9e-20
 Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 8/159 (5%)
 Frame = +2

Query: 2   RHQVWSELRDIA--PLVPG-PWLLFGDFNAITSLDEKIGG--NLDFSQSMLDFNLLINDL 166
           R ++W++LRD +  P++   PW++FGDFN I  ++E      N   +  M DF + +N  
Sbjct: 4   RKELWNDLRDHSDSPIIRSKPWIIFGDFNEILDMEEHSNSRENPVTTTGMRDFQMAVNHC 63

Query: 167 GLMDLGYKGPRFTWSNCRRFKDHVGERLGRALATTEWVAAFPNMIVKTLAFGTSDHLVLL 346
            + DL Y GP FTWSN +R  D + ++L R L    W+ +FP       A G SDHL   
Sbjct: 64  SITDLAYHGPLFTWSN-KRENDLIAKKLDRVLVNDVWLQSFPRSYSVFEAGGCSDHLRCR 122

Query: 347 INL---SASVENNSKPFRFFEMWLQNNSCLPVIEKAWNE 454
           INL   + +V    +PF+F  +  +    +P +E  WNE
Sbjct: 123 INLNVGAGAVVKGKRPFKFVNVITEMEHFIPTVESYWNE 161


>ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|222832345|gb|EEE70822.1|
           predicted protein [Populus trichocarpa]
          Length = 349

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 52/157 (33%), Positives = 88/157 (56%), Gaps = 4/157 (2%)
 Frame = +2

Query: 2   RHQVWSELRDIAPLVPG----PWLLFGDFNAITSLDEKIGGNLDFSQSMLDFNLLINDLG 169
           R  +WS   DI     G    PW+L GDFNAI +  +K+GG+  ++ +M   +  I +  
Sbjct: 117 REALWS---DIVSRSDGWESTPWILMGDFNAIRNQSDKLGGSTTWAGTMHRLDTCIREAK 173

Query: 170 LMDLGYKGPRFTWSNCRRFKDHVGERLGRALATTEWVAAFPNMIVKTLAFGTSDHLVLLI 349
           + DL Y G  +TWSN +  ++ +  +L R L   +W   FP    + L  G SDH  +++
Sbjct: 174 VDDLWYSGMHYTWSN-QCPENLIMRKLDRVLVNEKWNLNFPLSEARFLPSGMSDHSPMVV 232

Query: 350 NLSASVENNSKPFRFFEMWLQNNSCLPVIEKAWNEVS 460
            +  + +N  KPFRFF+MW+ ++  +P+++K W++ S
Sbjct: 233 KVIGNDQNIKKPFRFFDMWMDHDEFMPLVKKVWDQNS 269


>ref|XP_002319850.1| predicted protein [Populus trichocarpa] gi|222858226|gb|EEE95773.1|
            predicted protein [Populus trichocarpa]
          Length = 809

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 4/157 (2%)
 Frame = +2

Query: 2    RHQVWSELRDIAPLVPG----PWLLFGDFNAITSLDEKIGGNLDFSQSMLDFNLLINDLG 169
            R  +WS   DI     G    PW+L GDFNAI +  +++GG+  ++ +M   +  I +  
Sbjct: 641  REALWS---DIVSRSDGWESTPWILMGDFNAIRNQSDRLGGSTTWAGTMDRLDTCIREAK 697

Query: 170  LMDLGYKGPRFTWSNCRRFKDHVGERLGRALATTEWVAAFPNMIVKTLAFGTSDHLVLLI 349
            + DL Y G  +TWSN +  ++ +  +L R L   +W   FP    + L  G SDH  +++
Sbjct: 698  VDDLRYSGMHYTWSN-QCPENLIMRKLDRVLVNEKWNLKFPLSEARFLPSGMSDHSPMVV 756

Query: 350  NLSASVENNSKPFRFFEMWLQNNSCLPVIEKAWNEVS 460
             +  + +N  KPFRFF+MW+ ++  +P+++K W++ S
Sbjct: 757  KVIGNDQNIKKPFRFFDMWMDHDEFMPLVKKVWDQNS 793


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 58/153 (37%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
 Frame = +2

Query: 2   RHQVWSELRDIAPLVPGPWLLFGDFNAITSLDEKIGG-NLDFSQSMLDFNLLINDLGLMD 178
           R ++W EL  I     GPWLL GDFN  +SL E+ G  + +  +   DF   I +  L+D
Sbjct: 115 RKELWRELEQIKNQYTGPWLLAGDFNETSSLCERNGSESSEMQRRCKDFANWIENNALID 174

Query: 179 LGYKGPRFTWSNCRRFKDHVGERLGRALATTEWVAAFPNMIVKTLAFGTSDHLVLLINLS 358
           LG+ GP  TWS           RL R LA +EW   F   +V+ L    SDH  +LI+ S
Sbjct: 175 LGFTGPAHTWSRGLSPTTFKSARLDRGLANSEWKLKFTEGVVRNLPKSQSDHCPILISTS 234

Query: 359 --ASVENNSKPFRFFEMWLQNNSCLPVIEKAWN 451
             A V    KPFRF   WL +      + K WN
Sbjct: 235 GFAPVPRIIKPFRFQAAWLNHQVFCEFVRKNWN 267