BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036961
         (322 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containi...   154   7e-36
gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula]   150   1e-34
ref|XP_003595043.1| Pentatricopeptide repeat-containing protein ...   150   1e-34
ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containi...   142   4e-32
emb|CBI18522.3| unnamed protein product [Vitis vinifera]              142   4e-32

>ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Glycine max]
          Length = 1064

 Score =  154 bits (389), Expect = 7e-36
 Identities = 72/106 (67%), Positives = 89/106 (83%)
 Frame = -3

Query: 320 TSEASEISNSIFGDNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMCNVLIKAL 141
           TSEA E+  ++  D  T++TLLHGY++E N+ GIL+TKRR+EESGI MDVVMCNVLI+AL
Sbjct: 386 TSEADELLKNVAADVITYSTLLHGYMEEENIPGILQTKRRLEESGISMDVVMCNVLIRAL 445

Query: 140 IMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALE 3
            M+ AFED Y+ +KGMPEM L+P+SVTY TMIDGYCK GRI+EALE
Sbjct: 446 FMMGAFEDVYALYKGMPEMDLIPNSVTYCTMIDGYCKVGRIEEALE 491


>gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1053

 Score =  150 bits (378), Expect = 1e-34
 Identities = 67/106 (63%), Positives = 90/106 (84%)
 Frame = -3

Query: 320 TSEASEISNSIFGDNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMCNVLIKAL 141
           T EA E S ++  D  T++TLLHGY +E+N++GIL+TK+R+EE+GI MDVVMCNVLI+AL
Sbjct: 372 TQEADEFSKNVTADVVTYSTLLHGYTEEDNVLGILQTKKRLEEAGISMDVVMCNVLIRAL 431

Query: 140 IMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALE 3
            M++A+ED Y+ +KGMPEM L+P+S+TY TMIDGYCK G+I+EALE
Sbjct: 432 FMMQAYEDVYALYKGMPEMDLVPNSITYCTMIDGYCKVGKINEALE 477



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 31/91 (34%), Positives = 48/91 (52%)
 Frame = -3

Query: 281 DNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMCNVLIKALIMLRAFEDAYSAF 102
           D   ++  + GYV+E  LV +    R + E GI  D V   +LI     L   E +++  
Sbjct: 215 DVVLYSVWVCGYVEEKVLVEVFRKMREMVEKGICHDFVSYTILIDGFSKLGDVEKSFTFL 274

Query: 101 KGMPEMGLLPDSVTYLTMIDGYCKTGRIDEA 9
             M + G++P+ VTY  ++  YCK GRI+EA
Sbjct: 275 AKMIKEGIIPNKVTYTAIMSAYCKKGRIEEA 305


>ref|XP_003595043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355484091|gb|AES65294.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1070

 Score =  150 bits (378), Expect = 1e-34
 Identities = 67/106 (63%), Positives = 90/106 (84%)
 Frame = -3

Query: 320 TSEASEISNSIFGDNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMCNVLIKAL 141
           T EA E S ++  D  T++TLLHGY +E+N++GIL+TK+R+EE+GI MDVVMCNVLI+AL
Sbjct: 389 TQEADEFSKNVTADVVTYSTLLHGYTEEDNVLGILQTKKRLEEAGISMDVVMCNVLIRAL 448

Query: 140 IMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALE 3
            M++A+ED Y+ +KGMPEM L+P+S+TY TMIDGYCK G+I+EALE
Sbjct: 449 FMMQAYEDVYALYKGMPEMDLVPNSITYCTMIDGYCKVGKINEALE 494



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 31/91 (34%), Positives = 48/91 (52%)
 Frame = -3

Query: 281 DNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMCNVLIKALIMLRAFEDAYSAF 102
           D   ++  + GYV+E  LV +    R + E GI  D V   +LI     L   E +++  
Sbjct: 232 DVVLYSVWVCGYVEEKVLVEVFRKMREMVEKGICHDFVSYTILIDGFSKLGDVEKSFTFL 291

Query: 101 KGMPEMGLLPDSVTYLTMIDGYCKTGRIDEA 9
             M + G++P+ VTY  ++  YCK GRI+EA
Sbjct: 292 AKMIKEGIIPNKVTYTAIMSAYCKKGRIEEA 322


>ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Vitis vinifera]
          Length = 993

 Score =  142 bits (357), Expect = 4e-32
 Identities = 67/106 (63%), Positives = 85/106 (80%)
 Frame = -3

Query: 320 TSEASEISNSIFGDNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMCNVLIKAL 141
           TSEA E+S  I GD  TF+TLLHGY++E N+ GILETKRR+EE G+ +D+VMCN +IKAL
Sbjct: 314 TSEADEVSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKAL 373

Query: 140 IMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALE 3
           +M+ A EDAY+ +KGM  M L+ DSVTY TMI+GYC+  RI+EALE
Sbjct: 374 LMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALE 419


>emb|CBI18522.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  142 bits (357), Expect = 4e-32
 Identities = 67/106 (63%), Positives = 85/106 (80%)
 Frame = -3

Query: 320 TSEASEISNSIFGDNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMCNVLIKAL 141
           TSEA E+S  I GD  TF+TLLHGY++E N+ GILETKRR+EE G+ +D+VMCN +IKAL
Sbjct: 314 TSEADEVSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKAL 373

Query: 140 IMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALE 3
           +M+ A EDAY+ +KGM  M L+ DSVTY TMI+GYC+  RI+EALE
Sbjct: 374 LMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALE 419