BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036946
         (464 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   153   2e-35
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   144   7e-33
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   137   1e-30
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   109   2e-22
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   109   3e-22

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  153 bits (386), Expect = 2e-35
 Identities = 69/137 (50%), Positives = 101/137 (73%)
 Frame = -3

Query: 462 EMMNELNIKRRGGNVGLKLDVAQAFDSISWEFLLEVLKRFDFNDVWCDWVQTILKSAKIS 283
           E +N L+ K  GGN+  K+D+++AFD+++W+FLL+VLK+F F++ +C+W+  IL+SAK+S
Sbjct: 243 EAINMLDQKSFGGNLAFKVDISKAFDTLNWKFLLKVLKQFGFSETFCNWIDAILQSAKLS 302

Query: 282 VMVNGGPCGFFEVGRGLRQGDPLSPILFDIAEDVLSRGLNWLFCSGKVGYLASTSQVNAP 103
           + +NG   G+F   RG+RQGDPLSP+LF +AEDVLSR L  L   GK+  +  T     P
Sbjct: 303 ICINGSQQGYFSCSRGVRQGDPLSPLLFCLAEDVLSRSLTKLVEQGKLKQMRGTRNCLVP 362

Query: 102 THILFADDIFLFMNGGL 52
           +HIL+ADDI +F NGG+
Sbjct: 363 SHILYADDIMIFCNGGI 379


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score =  144 bits (363), Expect = 7e-33
 Identities = 68/150 (45%), Positives = 103/150 (68%)
 Frame = -3

Query: 462  EMMNELNIKRRGGNVGLKLDVAQAFDSISWEFLLEVLKRFDFNDVWCDWVQTILKSAKIS 283
            E +N L  ++ GGNV LK+D+A+AFD++ W FLL VL+RF F++ +  W+  IL+SA++S
Sbjct: 569  EAINLLEKRQYGGNVALKVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQSARLS 628

Query: 282  VMVNGGPCGFFEVGRGLRQGDPLSPILFDIAEDVLSRGLNWLFCSGKVGYLASTSQVNAP 103
            V+VNG   GFF    G+RQGDPLSP+LF + E+VLSR L+     G++  ++    V+ P
Sbjct: 629  VLVNGKAVGFFTCSHGVRQGDPLSPLLFCLVEEVLSRALSMAATDGQLIPMSYCRGVSFP 688

Query: 102  THILFADDIFLFMNGGLGGIKAVLKLLQEY 13
            THIL+ADD+ +F  G    I+ ++K+  +Y
Sbjct: 689  THILYADDVLIFCTGTKRNIRRLIKIFSQY 718


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  137 bits (344), Expect = 1e-30
 Identities = 64/150 (42%), Positives = 98/150 (65%)
 Frame = -3

Query: 462 EMMNELNIKRRGGNVGLKLDVAQAFDSISWEFLLEVLKRFDFNDVWCDWVQTILKSAKIS 283
           E +N L+ K  GGN+ LK+DV +AFD+++W+FLL VLK F FN+++C+W++TIL S+K+ 
Sbjct: 304 EAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMF 363

Query: 282 VMVNGGPCGFFEVGRGLRQGDPLSPILFDIAEDVLSRGLNWLFCSGKVGYLASTSQVNAP 103
           + +NG   GFF   RG+RQGDPLSP+LF I E+VLSR ++ L   G +  +A++     P
Sbjct: 364 ISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLP 423

Query: 102 THILFADDIFLFMNGGLGGIKAVLKLLQEY 13
            H  + DD+ +F    +  +  +  L   Y
Sbjct: 424 FHCFYVDDLMVFCKAKMSSLIVLKSLFTRY 453


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
           thaliana]
          Length = 1253

 Score =  109 bits (273), Expect = 2e-22
 Identities = 59/147 (40%), Positives = 88/147 (59%)
 Frame = -3

Query: 453 NELNIKRRGGNVGLKLDVAQAFDSISWEFLLEVLKRFDFNDVWCDWVQTILKSAKISVMV 274
           N  NI  RG    LK+D+ +AFDSI W+F++  LK     D +  W+   + +   SV V
Sbjct: 533 NRQNIDPRGM---LKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFSVCV 589

Query: 273 NGGPCGFFEVGRGLRQGDPLSPILFDIAEDVLSRGLNWLFCSGKVGYLASTSQVNAPTHI 94
           NG   GFF+  RGLRQG+PLSP LF +A +V S  LN  F +G + Y   TS ++  +H+
Sbjct: 590 NGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPLSI-SHL 648

Query: 93  LFADDIFLFMNGGLGGIKAVLKLLQEY 13
           +FADDI +F +GG   +  + + L+++
Sbjct: 649 MFADDIMVFFDGGSSSLHGISEALEDF 675


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  109 bits (272), Expect = 3e-22
 Identities = 60/144 (41%), Positives = 89/144 (61%), Gaps = 3/144 (2%)
 Frame = -3

Query: 450 ELNIKRRGGNVGLKLDVAQAFDSISWEFLLEVLKRFDFNDVWCDWVQTILKSAKISVMVN 271
           + NI  RG    LK+D+ +AFDS+ W F++E LK  +    + +W++  + S   S+ V+
Sbjct: 580 QANISSRGV---LKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVS 636

Query: 270 GGPCGFFEVGRGLRQGDPLSPILFDIAEDVLSRGLNWLFCSGKVGYLASTSQVNAPTHIL 91
           G  CG+F+  +GLRQGDPLSP LF IA ++LSR L   F  G +GY    S+V   + + 
Sbjct: 637 GSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRI-SSLA 695

Query: 90  FADDIFLFMNG---GLGGIKAVLK 28
           FADD+ +F +G    L GIK+VL+
Sbjct: 696 FADDLMIFYDGKASSLRGIKSVLE 719