BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036931
         (300 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX95863.1| retrotransposon protein, putative, unclassified [...    57   2e-06
gb|ABA99961.1| retrotransposon protein, putative, unclassified [...    57   2e-06

>gb|AAX95863.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1126

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/77 (36%), Positives = 42/77 (54%)
 Frame = -1

Query: 231 EEVTSVKMIYAKALTKFLRKNTHALVGQIFSITATELQQDSPESVTSLLHEFTDVFKEPK 52
           E ++  K + AK L    +    A V Q+ SI   E  +  P  ++++L E  D F+EP 
Sbjct: 565 ENLSDCKSVTAKQLKGMFKSRAIAQVVQLCSIEEIETNEQLPPEISAVLQESQDQFQEPS 624

Query: 51  SLPPSRNLDHHIPLKPD 1
            LPP R+ DH+IPL P+
Sbjct: 625 RLPPHRDFDHNIPLMPN 641


>gb|ABA99961.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1619

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 30/75 (40%), Positives = 42/75 (56%)
 Frame = -1

Query: 228 EVTSVKMIYAKALTKFLRKNTHALVGQIFSITATELQQDSPESVTSLLHEFTDVFKEPKS 49
           E+   K++ A  + +F ++   A + Q+ SIT     +  P  V  L+ EFT VF EPK 
Sbjct: 593 ELAHCKILSANEMQQFQQRKAVAHMVQLCSITDDVEPETIPVPVQELMQEFTTVFAEPKG 652

Query: 48  LPPSRNLDHHIPLKP 4
           LPP+R  DH IPL P
Sbjct: 653 LPPTRPFDHSIPLLP 667