BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036862
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containi...   103   1e-20
emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]   103   1e-20
ref|XP_002512558.1| pentatricopeptide repeat-containing protein,...    97   1e-18
ref|XP_002306265.1| predicted protein [Populus trichocarpa] gi|2...    92   6e-17
sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-c...    90   2e-16

>ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial [Vitis vinifera]
           gi|296088528|emb|CBI37519.3| unnamed protein product
           [Vitis vinifera]
          Length = 525

 Score =  103 bits (258), Expect = 1e-20
 Identities = 48/66 (72%), Positives = 59/66 (89%)
 Frame = +2

Query: 116 SSALPTYQPSNDADTISNLLIQHHNPFHTMESSLQLNGITLSSNLVHQSLLRLKHVSKIA 295
           S+ LP+ QPS DAD IS +L+QHHNPFH MESSLQLNGI LS++LVHQ+LLRL++VSKIA
Sbjct: 41  STGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIA 100

Query: 296 LAFFVW 313
           L+FF+W
Sbjct: 101 LSFFLW 106


>emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score =  103 bits (258), Expect = 1e-20
 Identities = 48/66 (72%), Positives = 59/66 (89%)
 Frame = +2

Query: 116 SSALPTYQPSNDADTISNLLIQHHNPFHTMESSLQLNGITLSSNLVHQSLLRLKHVSKIA 295
           S+ LP+ QPS DAD IS +L+QHHNPFH MESSLQLNGI LS++LVHQ+LLRL++VSKIA
Sbjct: 41  STGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIA 100

Query: 296 LAFFVW 313
           L+FF+W
Sbjct: 101 LSFFLW 106


>ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548519|gb|EEF50010.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 511

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 49/83 (59%), Positives = 66/83 (79%)
 Frame = +2

Query: 59  SRNLSSLPEELHKHQTNPSSSALPTYQPSNDADTISNLLIQHHNPFHTMESSLQLNGITL 238
           +R L + P  L + Q   S+ +LP+ +PSNDA+ +S +L+ HHNPFH MESSLQL+GITL
Sbjct: 9   TRTLLTSPPNL-RVQCLFSTFSLPSLEPSNDAEIVSEILLNHHNPFHAMESSLQLHGITL 67

Query: 239 SSNLVHQSLLRLKHVSKIALAFF 307
           SS+L+HQ+LLRL+H SKIAL+FF
Sbjct: 68  SSSLLHQTLLRLRHNSKIALSFF 90


>ref|XP_002306265.1| predicted protein [Populus trichocarpa] gi|222855714|gb|EEE93261.1|
           predicted protein [Populus trichocarpa]
          Length = 548

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 42/65 (64%), Positives = 54/65 (83%)
 Frame = +2

Query: 113 SSSALPTYQPSNDADTISNLLIQHHNPFHTMESSLQLNGITLSSNLVHQSLLRLKHVSKI 292
           + + LPT QPSNDAD +S +L+ HHNPFH MESSLQL GI+L+ +L+HQ+LLRL+H SKI
Sbjct: 44  NDTLLPTLQPSNDADLLSQILLHHHNPFHAMESSLQLPGISLTPSLLHQTLLRLRHNSKI 103

Query: 293 ALAFF 307
           AL+ F
Sbjct: 104 ALSLF 108


>sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g13420, mitochondrial; Flags: Precursor
           gi|110738270|dbj|BAF01064.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 509

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 42/61 (68%), Positives = 53/61 (86%)
 Frame = +2

Query: 125 LPTYQPSNDADTISNLLIQHHNPFHTMESSLQLNGITLSSNLVHQSLLRLKHVSKIALAF 304
           LP  +PS+DA+ IS +LI +HNPFH MESSLQLNGI+L+ NL+HQ+LLRL+H SKIAL+F
Sbjct: 32  LPKLEPSSDAELISQMLITNHNPFHFMESSLQLNGISLTPNLIHQTLLRLRHNSKIALSF 91

Query: 305 F 307
           F
Sbjct: 92  F 92