BLASTX nr result
ID: Coptis23_contig00036706
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00036706
(351 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat... 119 3e-25
ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containi... 112 3e-23
ref|XP_002303536.1| predicted protein [Populus trichocarpa] gi|2... 110 1e-22
emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera] 110 2e-22
ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containi... 108 3e-22
>ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 119 bits (297), Expect = 3e-25
Identities = 57/110 (51%), Positives = 81/110 (73%)
Frame = -3
Query: 337 GAIETAQCYFDRMPWRNTVSWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYV 158
G + +A+ FD MP RN VS+T MI GY+K G++ A F+F++ ER+VVAW+A+I+ YV
Sbjct: 234 GDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYV 293
Query: 157 QNGKPEEAVKLFNEMVAANVKLDGVTMLALVSAVSQLGSLNLCAWIEDCI 8
QNG+P EAVK+F EM + NVK D M++L+SA SQ+GSL L W++D +
Sbjct: 294 QNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYV 343
Score = 68.6 bits (166), Expect = 5e-10
Identities = 38/100 (38%), Positives = 57/100 (57%)
Frame = -3
Query: 337 GAIETAQCYFDRMPWRNTVSWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYV 158
G I A+ FD M RN VSWT MI GY+ ++ +A LFD+M E+ V+W A+I+ YV
Sbjct: 172 GEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYV 231
Query: 157 QNGKPEEAVKLFNEMVAANVKLDGVTMLALVSAVSQLGSL 38
+ G A K+F+EM NV V+ ++ ++ G +
Sbjct: 232 KCGDLRSARKMFDEMPHRNV----VSFTTMIDGYAKSGDM 267
>ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
gi|296083555|emb|CBI23551.3| unnamed protein product
[Vitis vinifera]
Length = 580
Score = 112 bits (280), Expect = 3e-23
Identities = 55/110 (50%), Positives = 77/110 (70%), Gaps = 2/110 (1%)
Frame = -3
Query: 340 YGAIETAQCYFDRMPWRNTVSWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCY 161
+G I++A+ +FD MP RN VSW MI GYSK G+VD A LFDQ+ ++++ + AMI CY
Sbjct: 249 FGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACY 308
Query: 160 VQNGKPEEAVKLFNEMV--AANVKLDGVTMLALVSAVSQLGSLNLCAWIE 17
QN +P+EA+KLFN M+ NV+ D +T+ +++SA SQLG L WIE
Sbjct: 309 AQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIE 358
Score = 71.2 bits (173), Expect = 8e-11
Identities = 36/101 (35%), Positives = 58/101 (57%)
Frame = -3
Query: 337 GAIETAQCYFDRMPWRNTVSWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYV 158
G + AQ FD +P ++ +SW MI GY++ G+++KA LF QM ER +W AMI+ YV
Sbjct: 188 GDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYV 247
Query: 157 QNGKPEEAVKLFNEMVAANVKLDGVTMLALVSAVSQLGSLN 35
+ G + A F+ M N V+ + ++S S+ G ++
Sbjct: 248 EFGDIDSARSFFDAMPQRN----NVSWMTMISGYSKCGDVD 284
Score = 67.4 bits (163), Expect = 1e-09
Identities = 34/103 (33%), Positives = 60/103 (58%)
Frame = -3
Query: 343 RYGAIETAQCYFDRMPWRNTVSWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITC 164
+ G +E A+ FD M RN VSW M+ GY K G++ A +FD++ +++V++W +MI+
Sbjct: 155 KLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISG 214
Query: 163 YVQNGKPEEAVKLFNEMVAANVKLDGVTMLALVSAVSQLGSLN 35
Y + G E+A+ LF +M N + A++S + G ++
Sbjct: 215 YARAGDMEKALSLFQQMPERNF----ASWNAMISGYVEFGDID 253
Score = 58.2 bits (139), Expect = 7e-07
Identities = 30/77 (38%), Positives = 51/77 (66%)
Frame = -3
Query: 274 TIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMVAANVK 95
T ++ Y+K G++DKA LF + ++++VA+TAMI NGK +A+KLF+EMV A +
Sbjct: 374 TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 433
Query: 94 LDGVTMLALVSAVSQLG 44
+ +T + L++A + G
Sbjct: 434 PNSITFIGLLTAYNHAG 450
>ref|XP_002303536.1| predicted protein [Populus trichocarpa] gi|222840968|gb|EEE78515.1|
predicted protein [Populus trichocarpa]
Length = 596
Score = 110 bits (275), Expect = 1e-22
Identities = 53/112 (47%), Positives = 80/112 (71%), Gaps = 2/112 (1%)
Frame = -3
Query: 337 GAIETAQCYFDRMPWRNTVSWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYV 158
G I++A +FD MP RN+VSW MI GYSK G+VD A LFDQ+ +++++ + AMI+C+
Sbjct: 266 GDIKSAWRFFDAMPERNSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISCFA 325
Query: 157 QNGKPEEAVKLFNEMVA--ANVKLDGVTMLALVSAVSQLGSLNLCAWIEDCI 8
QN +P +A+ LF+EM+ AN++ D +T+ ++VSA SQLG L +WIE +
Sbjct: 326 QNSQPRKALWLFSEMLKAYANIQPDQMTLASVVSACSQLGDLRFASWIESYV 377
Score = 67.0 bits (162), Expect = 2e-09
Identities = 35/110 (31%), Positives = 63/110 (57%)
Frame = -3
Query: 337 GAIETAQCYFDRMPWRNTVSWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYV 158
G + AQ FD++ ++ +SW MI GY+K+G++D+A LF QM E+ +W A+I+ YV
Sbjct: 204 GNLLEAQRVFDQISKKDVISWNSMISGYAKIGDMDRACVLFQQMPEKNYSSWNALISGYV 263
Query: 157 QNGKPEEAVKLFNEMVAANVKLDGVTMLALVSAVSQLGSLNLCAWIEDCI 8
G + A + F+ M N V+ + +++ S+ G ++ + + D I
Sbjct: 264 NCGDIKSAWRFFDAMPERN----SVSWITMIAGYSKCGDVDSASKLFDQI 309
Score = 63.9 bits (154), Expect = 1e-08
Identities = 35/108 (32%), Positives = 60/108 (55%)
Frame = -3
Query: 346 ARYGAIETAQCYFDRMPWRNTVSWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMIT 167
++ G + TAQ FD + +N VSW ++ G+ K GN+ +A +FDQ+ +++V++W +MI+
Sbjct: 170 SKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQISKKDVISWNSMIS 229
Query: 166 CYVQNGKPEEAVKLFNEMVAANVKLDGVTMLALVSAVSQLGSLNLCAW 23
Y + G + A LF +M N + AL+S G + AW
Sbjct: 230 GYAKIGDMDRACVLFQQMPEKNYS----SWNALISGYVNCGDIK-SAW 272
>emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
Length = 841
Score = 110 bits (274), Expect = 2e-22
Identities = 54/110 (49%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 340 YGAIETAQCYFDRMPWRNTVSWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCY 161
+G I++A+ +FD MP N VSW MI GYSK G+VD A LFDQ+ ++++ + AMI CY
Sbjct: 245 FGDIDSARSFFDAMPQXNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACY 304
Query: 160 VQNGKPEEAVKLFNEMV--AANVKLDGVTMLALVSAVSQLGSLNLCAWIE 17
QN +P+EA+KLFN M+ NV+ D +T+ +++SA SQLG L WIE
Sbjct: 305 AQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIE 354
Score = 71.2 bits (173), Expect = 8e-11
Identities = 36/101 (35%), Positives = 58/101 (57%)
Frame = -3
Query: 337 GAIETAQCYFDRMPWRNTVSWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYV 158
G + AQ FD +P ++ +SW MI GY++ G+++KA LF QM ER +W AMI+ YV
Sbjct: 184 GDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYV 243
Query: 157 QNGKPEEAVKLFNEMVAANVKLDGVTMLALVSAVSQLGSLN 35
+ G + A F+ M N V+ + ++S S+ G ++
Sbjct: 244 EFGDIDSARSFFDAMPQXN----NVSWMTMISGYSKCGDVD 280
Score = 67.4 bits (163), Expect = 1e-09
Identities = 34/103 (33%), Positives = 60/103 (58%)
Frame = -3
Query: 343 RYGAIETAQCYFDRMPWRNTVSWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITC 164
+ G +E A+ FD M RN VSW M+ GY K G++ A +FD++ +++V++W +MI+
Sbjct: 151 KLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISG 210
Query: 163 YVQNGKPEEAVKLFNEMVAANVKLDGVTMLALVSAVSQLGSLN 35
Y + G E+A+ LF +M N + A++S + G ++
Sbjct: 211 YARAGDMEKALSLFQQMPERNF----ASWNAMISGYVEFGDID 249
Score = 56.6 bits (135), Expect = 2e-06
Identities = 30/77 (38%), Positives = 51/77 (66%)
Frame = -3
Query: 274 TIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMVAANVK 95
T ++ Y+K G++DKA LF + ++++VA+TAMI NGK +A+KLF+EMV A +
Sbjct: 370 TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 429
Query: 94 LDGVTMLALVSAVSQLG 44
+ +T + L++A + G
Sbjct: 430 PNLITFIGLLTAYNHAG 446
>ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
Length = 580
Score = 108 bits (271), Expect = 3e-22
Identities = 53/110 (48%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
Frame = -3
Query: 340 YGAIETAQCYFDRMPWRNTVSWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCY 161
+G I++A+ +FD MP +N VSW MI GYSK G+VD A LFDQ+ ++++ + AMI CY
Sbjct: 249 FGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACY 308
Query: 160 VQNGKPEEAVKLFNEMV--AANVKLDGVTMLALVSAVSQLGSLNLCAWIE 17
QN +P EA+ LFN M+ NV+ D +T+ +++SA SQLG L WIE
Sbjct: 309 AQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIE 358
Score = 70.9 bits (172), Expect = 1e-10
Identities = 35/101 (34%), Positives = 58/101 (57%)
Frame = -3
Query: 337 GAIETAQCYFDRMPWRNTVSWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYV 158
G + AQ FD +P ++ +SW MI GY++ G+++KA LF QM ER +W AMI+ +V
Sbjct: 188 GDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHV 247
Query: 157 QNGKPEEAVKLFNEMVAANVKLDGVTMLALVSAVSQLGSLN 35
+ G + A F+ M N V+ + ++S S+ G ++
Sbjct: 248 EFGDIDSARSFFDAMPQKN----NVSWMTMISGYSKCGDVD 284
Score = 65.5 bits (158), Expect = 4e-09
Identities = 31/81 (38%), Positives = 50/81 (61%)
Frame = -3
Query: 343 RYGAIETAQCYFDRMPWRNTVSWTIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITC 164
+ G +E A+ FD M RN VSW M+ GY K G++ A +FD++ +++V++W +MI+
Sbjct: 155 KLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISG 214
Query: 163 YVQNGKPEEAVKLFNEMVAAN 101
Y + G E+A LF +M N
Sbjct: 215 YARAGDMEKASSLFQQMPERN 235
Score = 58.2 bits (139), Expect = 7e-07
Identities = 30/77 (38%), Positives = 51/77 (66%)
Frame = -3
Query: 274 TIMIGGYSKVGNVDKAGFLFDQMVEREVVAWTAMITCYVQNGKPEEAVKLFNEMVAANVK 95
T ++ Y+K G++DKA LF + ++++VA+TAMI NGK +A+KLF+EMV A +
Sbjct: 374 TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 433
Query: 94 LDGVTMLALVSAVSQLG 44
+ +T + L++A + G
Sbjct: 434 PNSITFIGLLTAYNHAG 450