BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036654
         (222 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002299387.1| predicted protein [Populus trichocarpa] gi|2...    92   4e-17
ref|XP_002532711.1| pentatricopeptide repeat-containing protein,...    91   1e-16
ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containi...    86   3e-15
ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arab...    84   1e-14
ref|NP_191302.2| pentatricopeptide repeat-containing protein [Ar...    83   2e-14

>ref|XP_002299387.1| predicted protein [Populus trichocarpa] gi|222846645|gb|EEE84192.1|
           predicted protein [Populus trichocarpa]
          Length = 814

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 46/73 (63%), Positives = 59/73 (80%)
 Frame = +2

Query: 2   DALLQLHEMQNKLDSERTNNDNYGNYERVCYRPNSITLMTTLPSCASLAALAKGKEIHAY 181
           DALL LHEMQ +++ + T + +Y + ++V ++PNSITLMT LP CASL+ALAKGKEIHAY
Sbjct: 403 DALLLLHEMQ-RIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAY 461

Query: 182 AIRNALASDIAVG 220
           AIRN LAS + VG
Sbjct: 462 AIRNLLASQVTVG 474


>ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527557|gb|EEF29678.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 679

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 45/73 (61%), Positives = 57/73 (78%)
 Frame = +2

Query: 2   DALLQLHEMQNKLDSERTNNDNYGNYERVCYRPNSITLMTTLPSCASLAALAKGKEIHAY 181
           DALL LHEMQ+  +    ++ +    ++ C++PNSITLMT LP CASLAALAKGKEIHAY
Sbjct: 469 DALLMLHEMQHANEGINKHDGD----KQACFKPNSITLMTVLPGCASLAALAKGKEIHAY 524

Query: 182 AIRNALASDIAVG 220
           A+RNALAS++ VG
Sbjct: 525 AVRNALASEVTVG 537


>ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 43/73 (58%), Positives = 55/73 (75%)
 Frame = +2

Query: 2   DALLQLHEMQNKLDSERTNNDNYGNYERVCYRPNSITLMTTLPSCASLAALAKGKEIHAY 181
           +AL+ LHEMQ   +++    D+  + +   Y+PN+ITLMT LP CA+LAA+AKGKEIHAY
Sbjct: 484 NALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAY 543

Query: 182 AIRNALASDIAVG 220
           AIRN LASDI VG
Sbjct: 544 AIRNMLASDITVG 556


>ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata] gi|297323990|gb|EFH54411.1| hypothetical protein
           ARALYDRAFT_486188 [Arabidopsis lyrata subsp. lyrata]
          Length = 886

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 47/75 (62%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
 Frame = +2

Query: 2   DALLQLHEMQ--NKLDSERTNNDNYGNYERVCYRPNSITLMTTLPSCASLAALAKGKEIH 175
           DALL LH+MQ   +  SER +        RV  +PNSITLMT LPSCA+L+ALAKGKEIH
Sbjct: 485 DALLMLHKMQILERKASERAS--------RVSLKPNSITLMTILPSCAALSALAKGKEIH 536

Query: 176 AYAIRNALASDIAVG 220
           AYAI+N LA+D+AVG
Sbjct: 537 AYAIKNNLATDVAVG 551


>ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
           gi|332646133|gb|AEE79654.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 46/73 (63%), Positives = 57/73 (78%)
 Frame = +2

Query: 2   DALLQLHEMQNKLDSERTNNDNYGNYERVCYRPNSITLMTTLPSCASLAALAKGKEIHAY 181
           DALL LH+MQN L+ + +   +     RV  +PNSITLMT LPSCA+L+ALAKGKEIHAY
Sbjct: 489 DALLLLHKMQN-LERKVSKGAS-----RVSLKPNSITLMTILPSCAALSALAKGKEIHAY 542

Query: 182 AIRNALASDIAVG 220
           AI+N LA+D+AVG
Sbjct: 543 AIKNNLATDVAVG 555