BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036605
         (412 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27634.3| unnamed protein product [Vitis vinifera]              235   2e-60
ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containi...   235   2e-60
ref|XP_003621545.1| Pentatricopeptide repeat-containing protein ...   234   4e-60
ref|XP_002515124.1| pentatricopeptide repeat-containing protein,...   229   2e-58
ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containi...   227   7e-58

>emb|CBI27634.3| unnamed protein product [Vitis vinifera]
          Length = 355

 Score =  235 bits (600), Expect = 2e-60
 Identities = 112/135 (82%), Positives = 125/135 (92%)
 Frame = -3

Query: 410 RGIESLDVDMVNTYLSIFLSKGKLSLACKLFEIFSENGIDPVSYTYNSMMTSFVKKGYFN 231
           +GI+S D+DMVNTYLSIFL+KGKLSLACKLFEIFS  G+DPV YTYNSMMT+FVKKGYFN
Sbjct: 141 KGIDSFDIDMVNTYLSIFLAKGKLSLACKLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFN 200

Query: 230 EAWGVLSEMGEKLCPADIATYNLVIQGLGKMGRVDLASAVLDQLVKQGGYLDIVMYNTLI 51
           EAWGV  EMGEK+CP DIATYN++IQGLGKMGR DLASAVLD L+KQGGYLDIVMYNTLI
Sbjct: 201 EAWGVFHEMGEKVCPPDIATYNVIIQGLGKMGRADLASAVLDMLMKQGGYLDIVMYNTLI 260

Query: 50  NALGKAGRIEEANQM 6
           NALGKAGRI+EA ++
Sbjct: 261 NALGKAGRIDEATKL 275


>ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
           [Vitis vinifera]
          Length = 792

 Score =  235 bits (600), Expect = 2e-60
 Identities = 112/135 (82%), Positives = 125/135 (92%)
 Frame = -3

Query: 410 RGIESLDVDMVNTYLSIFLSKGKLSLACKLFEIFSENGIDPVSYTYNSMMTSFVKKGYFN 231
           +GI+S D+DMVNTYLSIFL+KGKLSLACKLFEIFS  G+DPV YTYNSMMT+FVKKGYFN
Sbjct: 578 KGIDSFDIDMVNTYLSIFLAKGKLSLACKLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFN 637

Query: 230 EAWGVLSEMGEKLCPADIATYNLVIQGLGKMGRVDLASAVLDQLVKQGGYLDIVMYNTLI 51
           EAWGV  EMGEK+CP DIATYN++IQGLGKMGR DLASAVLD L+KQGGYLDIVMYNTLI
Sbjct: 638 EAWGVFHEMGEKVCPPDIATYNVIIQGLGKMGRADLASAVLDMLMKQGGYLDIVMYNTLI 697

Query: 50  NALGKAGRIEEANQM 6
           NALGKAGRI+EA ++
Sbjct: 698 NALGKAGRIDEATKL 712



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
 Frame = -3

Query: 395 LDVDMVNTYLSIFLSKGKLSLACKLFEIFSENGIDPVSY-----TYNSMMTSFVKKGYFN 231
           LD    N  +  F   G L  A  LF+   +  ++  S+     TYNS++      G   
Sbjct: 230 LDTQGYNICIHAFGCWGDLGTALNLFKEMKDKSLNSSSFGPDLCTYNSLIRVLCLVGKVK 289

Query: 230 EAWGVLSEMGEKLCPADIATYNLVIQGLGKMGRVDLASAVLDQLVKQGGYLDIVMYNTLI 51
           +A  V  E+       D  TY ++IQG  K  R+D A  + +++   G   D ++YNTL+
Sbjct: 290 DALIVWEELKGSGHEPDAFTYRILIQGCSKSYRMDDAMRIFNEMQYNGFCPDTIVYNTLL 349

Query: 50  NALGKAGRIEEANQM 6
           + L KA ++ EA Q+
Sbjct: 350 DGLFKARKVMEACQV 364



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 34/110 (30%), Positives = 56/110 (50%)
 Frame = -3

Query: 332 ACKLFEIFSENGIDPVSYTYNSMMTSFVKKGYFNEAWGVLSEMGEKLCPADIATYNLVIQ 153
           A ++F     NG  P +  YN+++    K     EA  V  +M E    A   T+N+VI 
Sbjct: 326 AMRIFNEMQYNGFCPDTIVYNTLLDGLFKARKVMEACQVFEKMVEDGVRASCWTHNIVIC 385

Query: 152 GLGKMGRVDLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMV 3
           GL + GR      +   L K+G ++D + Y+ ++  L + G++EEA Q+V
Sbjct: 386 GLFRNGRAAAGYTLFCDLKKKGKFVDGITYSIVVLQLCREGQLEEALQLV 435


>ref|XP_003621545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87241489|gb|ABD33347.1| Pentatricopeptide repeat
           [Medicago truncatula] gi|355496560|gb|AES77763.1|
           Pentatricopeptide repeat-containing protein [Medicago
           truncatula]
          Length = 791

 Score =  234 bits (598), Expect = 4e-60
 Identities = 111/134 (82%), Positives = 126/134 (94%)
 Frame = -3

Query: 410 RGIESLDVDMVNTYLSIFLSKGKLSLACKLFEIFSENGIDPVSYTYNSMMTSFVKKGYFN 231
           +G +S D+DMVNT+LSIFLSKGKLSLACKLFEIF++ G+DPVSYTYNS+M+SFVKKGYFN
Sbjct: 578 KGSDSFDIDMVNTFLSIFLSKGKLSLACKLFEIFTDAGVDPVSYTYNSIMSSFVKKGYFN 637

Query: 230 EAWGVLSEMGEKLCPADIATYNLVIQGLGKMGRVDLASAVLDQLVKQGGYLDIVMYNTLI 51
           EAW +LSEMGEKLCP DIATYN++IQGLGKMGR DLASAVLD L+KQGGYLDIVMYNTLI
Sbjct: 638 EAWAILSEMGEKLCPTDIATYNMIIQGLGKMGRADLASAVLDGLLKQGGYLDIVMYNTLI 697

Query: 50  NALGKAGRIEEANQ 9
           NALGKAGRI+E N+
Sbjct: 698 NALGKAGRIDEVNK 711



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 33/114 (28%), Positives = 60/114 (52%)
 Frame = -3

Query: 344 KLSLACKLFEIFSENGIDPVSYTYNSMMTSFVKKGYFNEAWGVLSEMGEKLCPADIATYN 165
           ++ +A ++F    +NG  P    YN ++    K    NE   +  +M ++   A  +TYN
Sbjct: 325 RMDVALRIFNEMKDNGFRPGVLVYNCVLDGLFKAAKVNEGCQMFEKMAQEGVKASCSTYN 384

Query: 164 LVIQGLGKMGRVDLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMV 3
           ++I GL K GR +    +   L K+G ++D + Y+ ++  L K G +EEA ++V
Sbjct: 385 ILIHGLIKNGRSEAGYMLFCDLKKKGQFVDGITYSIVVLQLCKEGLLEEALELV 438



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
 Frame = -3

Query: 401 ESLDVDM--VNTYLSIFLSKGKLSLACKLFEIFSE--NGIDPVSYTYNSMMTSFVKKGYF 234
           +S D D+   N  +  F S G L  + KLF    E  N   P   TYNS+++   K G  
Sbjct: 232 KSFDFDLWGYNICIHAFGSWGDLVTSMKLFNEMKEDKNLFGPDMCTYNSVLSVLCKVGKI 291

Query: 233 NEAWGVLSEMGEKLCPADIATYNLVIQGLGKMGRVDLASAVLDQLVKQGGYLDIVMYNTL 54
           N+A  V  E+       D  TY ++++G  +  R+D+A  + +++   G    +++YN +
Sbjct: 292 NDALIVWDELKGCGYEPDEFTYTILVRGCCRTYRMDVALRIFNEMKDNGFRPGVLVYNCV 351

Query: 53  INALGKAGRIEEANQM 6
           ++ L KA ++ E  QM
Sbjct: 352 LDGLFKAAKVNEGCQM 367


>ref|XP_002515124.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223545604|gb|EEF47108.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 898

 Score =  229 bits (583), Expect = 2e-58
 Identities = 106/135 (78%), Positives = 129/135 (95%)
 Frame = -3

Query: 410  RGIESLDVDMVNTYLSIFLSKGKLSLACKLFEIFSENGIDPVSYTYNSMMTSFVKKGYFN 231
            +G+ES D+DMVNT+LSIFL+KGKLS+ACKLFEIFS+ G++PVSYTYNS+M+SFVKKGYF+
Sbjct: 610  KGVESFDIDMVNTFLSIFLAKGKLSVACKLFEIFSDMGVNPVSYTYNSIMSSFVKKGYFS 669

Query: 230  EAWGVLSEMGEKLCPADIATYNLVIQGLGKMGRVDLASAVLDQLVKQGGYLDIVMYNTLI 51
            EAW VL++MGEK+CP+DIATYNL+IQGLGKMGR DLAS+VLD+L+KQGGYLDIVMYNTLI
Sbjct: 670  EAWDVLNQMGEKVCPSDIATYNLIIQGLGKMGRADLASSVLDKLMKQGGYLDIVMYNTLI 729

Query: 50   NALGKAGRIEEANQM 6
            NALGKAGRI+E  ++
Sbjct: 730  NALGKAGRIDEVRKL 744



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 31/122 (25%), Positives = 66/122 (54%)
 Frame = -3

Query: 392 DVDMVNTYLSIFLSKGKLSLACKLFEIFSENGIDPVSYTYNSMMTSFVKKGYFNEAWGVL 213
           D  + N+ L       K++ AC+LFE   ++G+   S+TYN ++    K G     + + 
Sbjct: 369 DTTVYNSLLDGMFKARKVTEACQLFEKMVQDGVRASSWTYNILIDGLCKNGRSAAGYSLF 428

Query: 212 SEMGEKLCPADIATYNLVIQGLGKMGRVDLASAVLDQLVKQGGYLDIVMYNTLINALGKA 33
            ++ +K    D  TY++++  L + G++  A ++++++ ++G  +D+V   +L+ A  K 
Sbjct: 429 CDLKKKGKFVDAITYSIIVLLLCREGQLKEALSLVEEMEERGFVVDLVTITSLLIAFHKQ 488

Query: 32  GR 27
           GR
Sbjct: 489 GR 490



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 33/114 (28%), Positives = 59/114 (51%)
 Frame = -3

Query: 344 KLSLACKLFEIFSENGIDPVSYTYNSMMTSFVKKGYFNEAWGVLSEMGEKLCPADIATYN 165
           +++ A K+F     NG  P +  YNS++    K     EA  +  +M +    A   TYN
Sbjct: 350 RMNDATKIFSEMQYNGFVPDTTVYNSLLDGMFKARKVTEACQLFEKMVQDGVRASSWTYN 409

Query: 164 LVIQGLGKMGRVDLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMV 3
           ++I GL K GR     ++   L K+G ++D + Y+ ++  L + G+++EA  +V
Sbjct: 410 ILIDGLCKNGRSAAGYSLFCDLKKKGKFVDAITYSIIVLLLCREGQLKEALSLV 463


>ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Glycine max]
          Length = 768

 Score =  227 bits (579), Expect = 7e-58
 Identities = 107/135 (79%), Positives = 125/135 (92%)
 Frame = -3

Query: 410 RGIESLDVDMVNTYLSIFLSKGKLSLACKLFEIFSENGIDPVSYTYNSMMTSFVKKGYFN 231
           +G +S DVDMVNT+LSIFL+KGKLSLACKLFEIFS+ G+DPVSYTYNS+M+SFVKKGYF 
Sbjct: 555 KGPDSFDVDMVNTFLSIFLAKGKLSLACKLFEIFSDAGVDPVSYTYNSIMSSFVKKGYFA 614

Query: 230 EAWGVLSEMGEKLCPADIATYNLVIQGLGKMGRVDLASAVLDQLVKQGGYLDIVMYNTLI 51
           EAW +L+EMGEK CP DIATYN++IQGLGKMGR DLASAVLD+L++QGGYLDIVMYNTLI
Sbjct: 615 EAWAILTEMGEKFCPTDIATYNMIIQGLGKMGRADLASAVLDRLLRQGGYLDIVMYNTLI 674

Query: 50  NALGKAGRIEEANQM 6
           NALGKA RI+E N++
Sbjct: 675 NALGKASRIDEVNKL 689



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 34/110 (30%), Positives = 58/110 (52%)
 Frame = -3

Query: 332 ACKLFEIFSENGIDPVSYTYNSMMTSFVKKGYFNEAWGVLSEMGEKLCPADIATYNLVIQ 153
           A ++F     NG  P +  YNS++    K     EA  +  +M ++       TYN++I 
Sbjct: 304 AIRIFNQMQSNGFRPDTLAYNSLLDGHFKATKVMEACQLFEKMVQEGVRPSCWTYNILIH 363

Query: 152 GLGKMGRVDLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMV 3
           GL + GR + A  +   L K+G ++D + Y+ ++  L K G++EEA Q+V
Sbjct: 364 GLFRNGRAEAAYTMFCDLKKKGQFVDGITYSIVVLQLCKEGQLEEALQLV 413



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 30/125 (24%), Positives = 68/125 (54%)
 Frame = -3

Query: 377 NTYLSIFLSKGKLSLACKLFEIFSENGIDPVSYTYNSMMTSFVKKGYFNEAWGVLSEMGE 198
           N+ L       K+  AC+LFE   + G+ P  +TYN ++    + G    A+ +  ++ +
Sbjct: 324 NSLLDGHFKATKVMEACQLFEKMVQEGVRPSCWTYNILIHGLFRNGRAEAAYTMFCDLKK 383

Query: 197 KLCPADIATYNLVIQGLGKMGRVDLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEE 18
           K    D  TY++V+  L K G+++ A  +++++  +G  +D+V   +L+ ++ + GR + 
Sbjct: 384 KGQFVDGITYSIVVLQLCKEGQLEEALQLVEEMESRGFVVDLVTITSLLISIHRHGRWDW 443

Query: 17  ANQMV 3
            ++++
Sbjct: 444 TDRLM 448