BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036599
         (480 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|2...   104   8e-21
ref|XP_002514579.1| pentatricopeptide repeat-containing protein,...    97   1e-18
ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pen...    92   4e-17
emb|CBI27406.3| unnamed protein product [Vitis vinifera]               92   4e-17
gb|AAF99828.1|AC027134_10 Hypothetical protein [Arabidopsis thal...    90   2e-16

>ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|222865040|gb|EEF02171.1|
           predicted protein [Populus trichocarpa]
          Length = 745

 Score =  104 bits (259), Expect = 8e-21
 Identities = 49/93 (52%), Positives = 69/93 (74%)
 Frame = -3

Query: 460 LIK*EEQDIRSTKTAYAIIIKAHCVKGSACKAVMLFNQMRDIGLEISIRDYSAVINRLCK 281
           L+  ++++I  TK AY  +IKAHCVKG A +AV +F+QM + G E+SI+DYSAVINRLCK
Sbjct: 629 LVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCK 688

Query: 280 RCCIDEVKILLSQMLVDGISPDKKLYEVINQHF 182
           RC I+E K     ML DG+SPD++++E++   F
Sbjct: 689 RCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAF 721


>ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223546183|gb|EEF47685.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 840

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 47/93 (50%), Positives = 59/93 (63%)
 Frame = -3

Query: 460  LIK*EEQDIRSTKTAYAIIIKAHCVKGSACKAVMLFNQMRDIGLEISIRDYSAVINRLCK 281
            L+  + + +   K AY  IIKAHC KG   KAV+ F QM + G E+SIRDYSAVI RLCK
Sbjct: 724  LVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRLCK 783

Query: 280  RCCIDEVKILLSQMLVDGISPDKKLYEVINQHF 182
            RC + E K     ML DG+ PD+ L+EV+   F
Sbjct: 784  RCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAF 816


>ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 47/93 (50%), Positives = 59/93 (63%)
 Frame = -3

Query: 460 LIK*EEQDIRSTKTAYAIIIKAHCVKGSACKAVMLFNQMRDIGLEISIRDYSAVINRLCK 281
           L+  ++Q IR TK AY  IIKAHC KG    A++ F+QM + G E+SIRDYSAVINRLCK
Sbjct: 713 LVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCK 772

Query: 280 RCCIDEVKILLSQMLVDGISPDKKLYEVINQHF 182
           R  I + K     ML  GI PD+ +  V+   F
Sbjct: 773 RNLITDAKFFFCMMLTHGIPPDQDICLVMLNAF 805


>emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 47/93 (50%), Positives = 59/93 (63%)
 Frame = -3

Query: 460 LIK*EEQDIRSTKTAYAIIIKAHCVKGSACKAVMLFNQMRDIGLEISIRDYSAVINRLCK 281
           L+  ++Q IR TK AY  IIKAHC KG    A++ F+QM + G E+SIRDYSAVINRLCK
Sbjct: 705 LVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCK 764

Query: 280 RCCIDEVKILLSQMLVDGISPDKKLYEVINQHF 182
           R  I + K     ML  GI PD+ +  V+   F
Sbjct: 765 RNLITDAKFFFCMMLTHGIPPDQDICLVMLNAF 797


>gb|AAF99828.1|AC027134_10 Hypothetical protein [Arabidopsis thaliana]
          Length = 337

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 2/95 (2%)
 Frame = -3

Query: 448 EEQDIRSTKTAYAIIIKAHCVKGSACKAVMLFNQMRDIGLEISIRDYSAVINRLCKRCCI 269
           +EQ++  +K AY  +IKAHCVKG    AV LF+Q+   G  +SIRDYSAVINRLC+R  +
Sbjct: 235 QEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCRRHLV 294

Query: 268 DEVKILLSQMLVDGISPDKKLYEVI--NQHFLPWT 170
           +E K     ML  GISPD  + EV+  +   L WT
Sbjct: 295 NESKFFFCLMLSQGISPDLDICEVMIKSDELLSWT 329