BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034150
         (826 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    65   1e-08
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    60   6e-07

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
 Frame = +2

Query: 428 MRIAFWNIRGVMKDKGRDRLREAIKSHSPDIICLAEPLVRPQVNILDSFCMNYFENILLH 607
           M I +W +RG+     +  L+     H P +I +AEP++       +S    Y+++I + 
Sbjct: 1   MIILYWTVRGIDNVDTKIALKNFFNCHKPLLIFVAEPMI-----AFESVPPWYWDSIGVS 55

Query: 608 ----NDSQNRIGNLWVFWKKGISASVISASDQHISIVV----DGCYVSCVHANCWLGNRR 763
               N  +    NLW  W + +SA V+  SDQ I++ +       YV+ V+A+ +   RR
Sbjct: 56  KYCVNGREILQPNLWALWGREVSAIVMFISDQCIALEISCHQSTVYVAAVYASTFYLKRR 115

Query: 764 ELWTDLSILNP--RMPWLVIGDF 826
           +LW +L+ L    + PWL IGDF
Sbjct: 116 QLWAELTNLQGCFQGPWLFIGDF 138


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score = 60.1 bits (144), Expect = 6e-07
 Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
 Frame = +2

Query: 440 FWNIRGVMKDKGRDRLREAIKSHSPDIICLAEPLVRPQVNILDSFCMNYFENILLHNDSQ 619
           FWN+RG+ K      +++ I+ ++    CL E  V+ +  +       + +  +L N   
Sbjct: 5   FWNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVK-ESKVSQLVGKLFKDWSILTNYEH 63

Query: 620 NRIGNLWVFWKKGISASVISASDQHISIVV------DGCYVSCVHANCWLGNRRELWTDL 781
           NR G +WV W+K +  S I  S Q ++  V      D  + S V+A+ ++  R+ LW++L
Sbjct: 64  NRRGRIWVLWRKNVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSEL 123

Query: 782 -----SILNPRMPWLVIGDF 826
                S +    PW ++GDF
Sbjct: 124 KDHYDSPIIRHKPWTLLGDF 143