BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031870
         (611 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   107   2e-21
ref|XP_003566324.1| PREDICTED: putative ribonuclease H protein A...    92   6e-17
gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat...    91   2e-16
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]              86   7e-15
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]              86   7e-15

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score =  107 bits (266), Expect = 2e-21
 Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 3/194 (1%)
 Frame = +2

Query: 26   FLWTGDP---SRSRATTISWEKVCKPLNAGGLGIRRLRYINSSMLMKLTWRILTKVDDFA 196
            F + G P    + +  T+SW+ +C+P + GGL I+  R IN++ ++KL W +L+    +A
Sbjct: 759  FTYLGCPIFRGKPKVCTVSWKILCRPWSEGGLDIKSTRLINNAAMLKLAWNLLSSNSQWA 818

Query: 197  TFMKLKYFSRDGDTCQY*KASSIWHGVREALLEIKSRNQWVIGNGTKADLIRNNWFXXXX 376
              +K ++FS+ G   +Y   SS+WHGV+  +  ++    W++G G + +L  NNW     
Sbjct: 819  VLLKRRFFSQ-GQPIRYFVKSSVWHGVKNHMSILRQNKLWIVGTGDRINLWTNNWL-GEP 876

Query: 377  XXXXXXXXXXXXKGFNAKVNSILVNKNWSIPPILQNMLAAAGMSIDNVHRGASEQEDYMV 556
                          F  KV+ ++VN NW +P  L  ++      + ++    +E  D +V
Sbjct: 877  LVTLFNIDPFFHASFTGKVSEVIVNGNWDLPASL--LVPEVTSRLASITLPRTELPDSLV 934

Query: 557  WSPDTQGRFTCKSA 598
            W+    G+ T K A
Sbjct: 935  WTHSADGQLTSKHA 948


>ref|XP_003566324.1| PREDICTED: putative ribonuclease H protein At1g65750-like
           [Brachypodium distachyon]
          Length = 776

 Score = 92.4 bits (228), Expect = 6e-17
 Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 5/199 (2%)
 Frame = +2

Query: 20  RNFLWTGDPSRSRATTISWEKVCKPLNAGGLGIRRLRYINSSMLMKLTWRILTKVDDF-A 196
           RNFLW  + ++ +   ++WEK+ +P + GG+G R +   N ++L K  WR++ K D F A
Sbjct: 19  RNFLWGDEENKRKVHWLAWEKMIQPKSKGGMGFRDMALFNQALLAKQAWRLIDKPDSFCA 78

Query: 197 TFMKLKYFSRDG--DTCQY*KASSIWHGVREALLEIKSRNQWVIGNGTKADLIRNNWFXX 370
             +K KYF      DT     +S +W G++  L  +K    W IGNG   D+ R+NW   
Sbjct: 79  RLIKAKYFPHGNLLDTAVIQSSSPVWQGIKHGLDLLKKGYIWRIGNGRSVDIWRHNWLPR 138

Query: 371 XXXXXXXXXXXXXXKGFNAKVNSILVN--KNWSIPPILQNMLAAAGMSIDNVHRGASEQE 544
                         +    +V+ +++     W+   I Q        +I  +     + +
Sbjct: 139 GNLQVSGTAGNTRLR----RVSDLMLPGLHTWNEELIHQIFYPHDADAILQITLPNYDVD 194

Query: 545 DYMVWSPDTQGRFTCKSAF 601
           D + W P+  G F+ KSA+
Sbjct: 195 DVVAWQPEKLGFFSVKSAY 213


>gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula]
          Length = 480

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 48/151 (31%), Positives = 77/151 (50%)
 Frame = +2

Query: 17  MRNFLWTGDPSRSRATTISWEKVCKPLNAGGLGIRRLRYINSSMLMKLTWRILTKVDDFA 196
           ++NF+W+GD    +  T+SW+ +C+P  AGGL I+    IN S+++ L W+  T    +A
Sbjct: 296 IKNFIWSGDIYTHKVCTVSWKVMCRPWAAGGLDIKPTCLINESLILLLAWQFSTADSQWA 355

Query: 197 TFMKLKYFSRDGDTCQY*KASSIWHGVREALLEIKSRNQWVIGNGTKADLIRNNWFXXXX 376
             M  + F + G   Q+   SS+W G++E L  I S + W++G G   +L  +NW     
Sbjct: 356 ALMHHR-FLKHGTPLQHYFLSSMWGGIKEHLSTISSNSIWIVGTGANINLWTDNWLGIRL 414

Query: 377 XXXXXXXXXXXXKGFNAKVNSILVNKNWSIP 469
                       K F A V  ++VN   S+P
Sbjct: 415 VDSLNISPTLHTK-FRASVADVIVNGALSLP 444


>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 11/211 (5%)
 Frame = +2

Query: 11   RTMRNFLWTGDPSRSRATTISWEKVCKPLNAGGLGIRRLRYINSSMLMKLTWRILTKVDD 190
            +T RNFLW  D +  +  +++W ++CKP N GGLG+R  R  N + L K+ W+I + +D 
Sbjct: 824  KTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDK 883

Query: 191  FATFMKLKYFSRDGDTCQY*KASSI---WHGVREALLEIKSRNQWVIGNGTKADLIRNNW 361
                +  + + ++ D       S+    W  + +    +    +W +GNG K +   N+W
Sbjct: 884  LWVKVLREKYVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNGRKIN-FWNDW 942

Query: 362  FXXXXXXXXXXXXXXXXKGFNAKVNSILVN-KNWS-------IPPILQNMLAAAGMSIDN 517
            +                   + KV  ++ + + W        +P  + +M+ A  ++I+ 
Sbjct: 943  WVGDGPLASNTDCINQPHMTDIKVEDLITSQRRWDTGALHNILPTNMIDMVRATPIAIN- 1001

Query: 518  VHRGASEQEDYMVWSPDTQGRFTCKSAFDSI 610
                 SEQED++ W   T G  T  SA+  I
Sbjct: 1002 -----SEQEDFLSWPHSTTGMVTVSSAYSLI 1027


>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 11/211 (5%)
 Frame = +2

Query: 11   RTMRNFLWTGDPSRSRATTISWEKVCKPLNAGGLGIRRLRYINSSMLMKLTWRILTKVDD 190
            +T RNFLW  D +  +  +++W ++CKP N GGLG+R  R  N + L K+ W+I + +D 
Sbjct: 824  KTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDK 883

Query: 191  FATFMKLKYFSRDGDTCQY*KASSI---WHGVREALLEIKSRNQWVIGNGTKADLIRNNW 361
                +  + + ++ D       S+    W  + +    +    +W +GNG K +   N+W
Sbjct: 884  LWVKVLREKYVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNGRKIN-FWNDW 942

Query: 362  FXXXXXXXXXXXXXXXXKGFNAKVNSILVN-KNWS-------IPPILQNMLAAAGMSIDN 517
            +                   + KV  ++ + + W        +P  + +M+ A  ++I+ 
Sbjct: 943  WVGDGPLASNTDCINQPHMTDIKVEDLITSQRRWDTGALHNILPTNMIDMVRATPIAIN- 1001

Query: 518  VHRGASEQEDYMVWSPDTQGRFTCKSAFDSI 610
                 SEQED++ W   T G  T  SA+  I
Sbjct: 1002 -----SEQEDFLSWPHSTTGMVTVSSAYSLI 1027