BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031834
         (474 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containi...    91   1e-16
ref|XP_002523370.1| pentatricopeptide repeat-containing protein,...    83   3e-14
ref|XP_002320192.1| predicted protein [Populus trichocarpa] gi|2...    80   2e-13
emb|CBI40500.3| unnamed protein product [Vitis vinifera]               75   6e-12
ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10

>ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 52/140 (37%), Positives = 75/140 (53%)
 Frame = -1

Query: 438 MEKTIPFQHFNPSFLHTQVTKNTTNTSKPFTLLHVLKPSQTSLTLSSIKFHTLDDFKKVD 259
           MEK +P  H +P   +               L H  KP +T  +   +  H+ DD   + 
Sbjct: 1   MEKLVPLHHLHPPLQNP--------------LTH--KPIKTPTSKLYLDSHSSDDSNVIT 44

Query: 258 SLLLVKKMHAQVVKMSEKWDSDVVMESLIEMYLKYGDFRSASIVFLVGFSRNRLSLSFLI 79
           SL  VK MHAQ++K+ +KW+ D   ++LI  YL +GDF SA++VF VG  RN L  +  +
Sbjct: 45  SLTSVKMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFV 104

Query: 78  EEFDKAGVSLYEFLEIFGEL 19
           EEF  +  SL+  LE+F EL
Sbjct: 105 EEFKSSAGSLHIVLEVFKEL 124


>ref|XP_002523370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537458|gb|EEF39086.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 695

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 48/134 (35%), Positives = 73/134 (54%)
 Frame = -1

Query: 402 SFLHTQVTKNTTNTSKPFTLLHVLKPSQTSLTLSSIKFHTLDDFKKVDSLLLVKKMHAQV 223
           S   T  + +TT T+ P      L  S +   ++  KF +LD    V +L  +  MHAQ+
Sbjct: 35  SLAPTPTSPDTTTTTTP------LSASPSPQQMNVPKFQSLDSSSDVKTLDSINAMHAQL 88

Query: 222 VKMSEKWDSDVVMESLIEMYLKYGDFRSASIVFLVGFSRNRLSLSFLIEEFDKAGVSLYE 43
           +K    W+SD    +LI  YL+ GDFRS+++VF VGF+RN +  S  +EEF+  G    +
Sbjct: 89  IKTCSMWNSDSNARTLITSYLELGDFRSSAMVFFVGFARNYVMWSSFMEEFENCGGDPIQ 148

Query: 42  FLEIFGELCHREVS 1
            L +F EL  + V+
Sbjct: 149 VLNVFKELHSKGVT 162


>ref|XP_002320192.1| predicted protein [Populus trichocarpa] gi|222860965|gb|EEE98507.1|
           predicted protein [Populus trichocarpa]
          Length = 398

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 53/148 (35%), Positives = 74/148 (50%), Gaps = 8/148 (5%)
 Frame = -1

Query: 438 MEKTIPFQHFNPSFLHTQVTKNTTNTSKPFTLLHVLKPSQTSLT--------LSSIKFHT 283
           M+K  PF H +P  L     K     S P   + +   S    T        L S+   T
Sbjct: 1   MDKLAPFHH-SPPLLQNHKPKPIRTHSPPSLSVALTTTSSLETTPRPTHVPNLGSLNGFT 59

Query: 282 LDDFKKVDSLLLVKKMHAQVVKMSEKWDSDVVMESLIEMYLKYGDFRSASIVFLVGFSRN 103
            D     ++L  VK MHAQ++K   KW+SD + + LI  YL+ GD +SA++VF VGF+RN
Sbjct: 60  ADS----NTLDSVKAMHAQMIKKGNKWNSDSMAKHLITSYLELGDCKSAAVVFFVGFARN 115

Query: 102 RLSLSFLIEEFDKAGVSLYEFLEIFGEL 19
            +  +  +EEF   G    E LE+F EL
Sbjct: 116 YVMWNNFLEEFKSFGGDPSEVLEVFKEL 143


>emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 35/76 (46%), Positives = 51/76 (67%)
 Frame = -1

Query: 246 VKKMHAQVVKMSEKWDSDVVMESLIEMYLKYGDFRSASIVFLVGFSRNRLSLSFLIEEFD 67
           +K MHAQ++K+ +KW+ D   ++LI  YL +GDF SA++VF VG  RN L  +  +EEF 
Sbjct: 439 IKMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFK 498

Query: 66  KAGVSLYEFLEIFGEL 19
            +  SL+  LE+F EL
Sbjct: 499 SSAGSLHIVLEVFKEL 514


>ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 37/91 (40%), Positives = 58/91 (63%)
 Frame = -1

Query: 291 FHTLDDFKKVDSLLLVKKMHAQVVKMSEKWDSDVVMESLIEMYLKYGDFRSASIVFLVGF 112
           FH L   + ++S   V+++HAQ++KM +K +   +  S++  YL++GDF SA+ VF VGF
Sbjct: 35  FHPLGGIRTLNS---VRELHAQMIKMPKKGNLVTMDGSMMRNYLEFGDFESATKVFFVGF 91

Query: 111 SRNRLSLSFLIEEFDKAGVSLYEFLEIFGEL 19
           +RN L  +  +EEF   G   +E LE+F EL
Sbjct: 92  ARNYLLWNSFLEEFASFGGDSHEILEVFKEL 122