BLASTX nr result
ID: Coptis23_contig00031810
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00031810
(634 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 89 9e-16
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 89 9e-16
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E sub... 89 9e-16
ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E sub... 86 4e-15
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 86 4e-15
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 88.6 bits (218), Expect = 9e-16
Identities = 80/271 (29%), Positives = 119/271 (43%), Gaps = 64/271 (23%)
Frame = +3
Query: 3 RSIMDGDVVFINRPPSMLKHSLQALSMYVHEDHVQNQSSHLLVDPMVLILMVAVF----- 167
R IMDGD+VFINRPP+ KHSLQAL +Y+H+DHV + ++P++ + A F
Sbjct: 402 RRIMDGDIVFINRPPTTHKHSLQALRVYLHDDHV------VKINPLICGPLSADFDGDCI 455
Query: 168 -IYFTLSLMLQGQRCWSYFLWNN-LHSHAGSLNLHSHTGSLNVVSR*CIAIPEDYVQENF 341
+++ S+ + + + + L SH+G+LNL SL + ++ F
Sbjct: 456 HLFYPQSIAAKAEVLGLFSVEKQLLSSHSGNLNLQLANDSLLSLKM--------MFRKYF 507
Query: 342 L*EGNCAPSSYIPTFVSSSLPEPACSSIES---QWTSLQILQSVFPRPF*LFGDRY---- 500
L A + + FVSS LP PA + S WT+LQILQ+V P F GD Y
Sbjct: 508 L---GKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFDCHGDSYLIKN 564
Query: 501 ----------------*NLILTG----------------------------------NDF 530
N ILT +D+
Sbjct: 565 SNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDDY 624
Query: 531 SVPRSLFEDLPASIQDISSLMHLLRCKYNEL 623
S+P + + L +IQ +S L++ LR +NEL
Sbjct: 625 SMPMAFLQALQKNIQVLSPLLYQLRSTFNEL 655
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 88.6 bits (218), Expect = 9e-16
Identities = 80/271 (29%), Positives = 119/271 (43%), Gaps = 64/271 (23%)
Frame = +3
Query: 3 RSIMDGDVVFINRPPSMLKHSLQALSMYVHEDHVQNQSSHLLVDPMVLILMVAVF----- 167
R IMDGD+VFINRPP+ KHSLQAL +Y+H+DHV + ++P++ + A F
Sbjct: 432 RRIMDGDIVFINRPPTTHKHSLQALRVYLHDDHV------VKINPLICGPLSADFDGDCI 485
Query: 168 -IYFTLSLMLQGQRCWSYFLWNN-LHSHAGSLNLHSHTGSLNVVSR*CIAIPEDYVQENF 341
+++ S+ + + + + L SH+G+LNL SL + ++ F
Sbjct: 486 HLFYPQSIAAKAEVLGLFSVEKQLLSSHSGNLNLQLANDSLLSLKM--------MFRKYF 537
Query: 342 L*EGNCAPSSYIPTFVSSSLPEPACSSIES---QWTSLQILQSVFPRPF*LFGDRY---- 500
L A + + FVSS LP PA + S WT+LQILQ+V P F GD Y
Sbjct: 538 L---GKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFDCHGDSYLIKN 594
Query: 501 ----------------*NLILTG----------------------------------NDF 530
N ILT +D+
Sbjct: 595 SNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDDY 654
Query: 531 SVPRSLFEDLPASIQDISSLMHLLRCKYNEL 623
S+P + + L +IQ +S L++ LR +NEL
Sbjct: 655 SMPMAFLQALQKNIQVLSPLLYQLRSTFNEL 685
>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
max]
Length = 2020
Score = 88.6 bits (218), Expect = 9e-16
Identities = 73/207 (35%), Positives = 107/207 (51%), Gaps = 12/207 (5%)
Frame = +3
Query: 3 RSIMDGDVVFINRPPSMLKHSLQALSMYVHEDHVQNQSSHLLVDPMVLILMVA------V 164
R IMDGD+VFINRPP+ KHSLQAL +Y+HEDH + ++P++ + A V
Sbjct: 406 RRIMDGDIVFINRPPTTHKHSLQALYVYIHEDHT------VKINPLICGPLGADFDGDCV 459
Query: 165 FIYFTLSLMLQGQRCWSYFLWNN-LHSHAGSLNLHSHTGSLNVVSR*CIAIPEDYVQENF 341
+++ SL + + + + N L SH+G+LNL T SL + V+ F
Sbjct: 460 HLFYPQSLAAKAEVVELFAVENQLLSSHSGNLNLQLSTDSLLALKM--------LVKRCF 511
Query: 342 L*EGNCAPSSYIPTFVSSSLPEPA---CSSIESQWTSLQILQSVFPRPF*LFGDRY*NLI 512
L A ++ + F+ LP PA SS ++ WTS+QILQ P F G RY LI
Sbjct: 512 L---GRAAANQLAMFLLLPLPRPALLKASSDDACWTSIQILQGALPMGFDCTGGRY--LI 566
Query: 513 LTGN--DFSVPRSLFEDLPASIQDISS 587
+F R + LPA+I +I++
Sbjct: 567 RQSEILEFDFSR---DALPATINEIAA 590
>ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
max]
Length = 2098
Score = 86.3 bits (212), Expect = 4e-15
Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 12/207 (5%)
Frame = +3
Query: 3 RSIMDGDVVFINRPPSMLKHSLQALSMYVHEDHVQNQSSHLLVDPMVLILMVA------V 164
R IMDGD+VFINRPP+ KHSLQAL +Y+HEDH + ++P++ + A V
Sbjct: 406 RRIMDGDIVFINRPPTTHKHSLQALYVYIHEDHT------VKINPLICGPLGADFDGDCV 459
Query: 165 FIYFTLSLMLQGQRCWSYFLWNN-LHSHAGSLNLHSHTGSLNVVSR*CIAIPEDYVQENF 341
+++ SL + + + + N L SH+G+LNL T SL + V+ F
Sbjct: 460 HLFYPQSLAAKAEVVELFSVENQLLSSHSGNLNLQLSTDSLLSLKM--------LVKRCF 511
Query: 342 L*EGNCAPSSYIPTFVSSSLPEPA---CSSIESQWTSLQILQSVFPRPF*LFGDRY*NLI 512
+ A ++ + F+ LP PA SS ++ WTS+QILQ P F G RY LI
Sbjct: 512 F---DRAAANQLAMFILLPLPRPALLKASSGDACWTSIQILQCALPLGFDCTGGRY--LI 566
Query: 513 LTGN--DFSVPRSLFEDLPASIQDISS 587
+F R + LPA++ +I++
Sbjct: 567 RQSEILEFEFSRDV---LPATVNEIAA 590
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 86.3 bits (212), Expect = 4e-15
Identities = 68/178 (38%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Frame = +3
Query: 3 RSIMDGDVVFINRPPSMLKHSLQALSMYVHEDHVQNQSSHLLVDPMVLILMVA------V 164
R IMDGD+VFINRPP+ KHSLQALS+YVH+DH + ++P++ + A V
Sbjct: 462 RRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHT------VKINPLICGPLSADFDGDCV 515
Query: 165 FIYFTLSLMLQGQRCWSYFLWNN-LHSHAGSLNLHSHTGSLNVVSR*CIAIPEDYVQENF 341
+++ SL + + + + L SH+G+LNL T SL + + E Y F
Sbjct: 516 HLFYPQSLGAKAEVLELFSVEKQLLSSHSGNLNLQLATDSLLSLK----VLFERY----F 567
Query: 342 L*EGNCAPSSYIPTFVSSSLPEPA-----CSSIESQWTSLQILQSVFPRPF*LFGDRY 500
L N A + + FVS SLP PA CS WT+LQILQ+ P F G+R+
Sbjct: 568 L---NKAAAQQLVMFVSMSLPRPALLKSPCSG--PCWTALQILQTALPSYFDCIGERH 620