BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031805
         (426 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316451.1| predicted protein [Populus trichocarpa] gi|2...    67   2e-09
ref|XP_002528578.1| pentatricopeptide repeat-containing protein,...    60   2e-07
ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containi...    60   2e-07

>ref|XP_002316451.1| predicted protein [Populus trichocarpa] gi|222865491|gb|EEF02622.1|
           predicted protein [Populus trichocarpa]
          Length = 707

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
 Frame = +3

Query: 15  YNSLIMSHCREGNAQEAV-LLKDMEAKGVLHFSLVLTYSTLVEGHLKSKDFSGTSVWCRE 191
           YNSLI+ H +EG   E   L+ DM+AKG++  +   TYS L++GH   KDF+G  VW RE
Sbjct: 594 YNSLILGHLKEGKLSETKDLVDDMKAKGLIPEAD--TYSLLIQGHCDLKDFNGAYVWYRE 651

Query: 192 MVEKGFIP 215
           M+E GF+P
Sbjct: 652 MLENGFLP 659


>ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531974|gb|EEF33786.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 817

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +3

Query: 9   LAYNSLIMSHCREGNAQEAV-LLKDMEAKGVLHFSLVLTYSTLVEGHLKSKDFSGTSVWC 185
           + YNSLI+ H REG       L+ +M+AK +       TY  LV+GH   KDFSG  VW 
Sbjct: 701 MTYNSLILGHFREGKLSNIKDLVNNMKAKELA--PKADTYDILVKGHCDLKDFSGAYVWY 758

Query: 186 REMVEKGFIPRFNI 227
           REMVE  F+P  +I
Sbjct: 759 REMVENNFLPNASI 772


>ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = +3

Query: 9   LAYNSLIMSHCREGNAQEAV-LLKDMEAKGVLHFSLVLTYSTLVEGHLKSKDFSGTSVWC 185
           + YN LI+ H +EG   +   L+ DM+ +G++      TY  L+ GH K KDF G  VW 
Sbjct: 707 MTYNCLILGHFKEGRMHKVKNLVNDMKIRGLI--PKTETYDILIVGHCKLKDFDGAYVWY 764

Query: 186 REMVEKGFIPRFNI 227
           REM E GF P  +I
Sbjct: 765 REMFENGFTPSVSI 778