BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031720
         (547 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002302689.1| predicted protein [Populus trichocarpa] gi|2...   279   2e-73
ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|2...   278   5e-73
ref|XP_002515124.1| pentatricopeptide repeat-containing protein,...   266   1e-69
ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containi...   266   2e-69
ref|XP_002874971.1| pentatricopeptide repeat-containing protein ...   265   3e-69

>ref|XP_002302689.1| predicted protein [Populus trichocarpa] gi|222844415|gb|EEE81962.1|
           predicted protein [Populus trichocarpa]
          Length = 640

 Score =  279 bits (713), Expect = 2e-73
 Identities = 133/184 (72%), Positives = 154/184 (83%), Gaps = 3/184 (1%)
 Frame = +3

Query: 3   GIELDSWRYNICIHAFGLWGDFGTSLKLFKEMKEKGERS---EPDLCTYNSLIHVLCAVG 173
           G EL++W YNICIHAFG WGD  TSL+LFKEMKEK   S   +PDLCTYNSLIHVLC  G
Sbjct: 75  GFELNTWGYNICIHAFGCWGDLTTSLRLFKEMKEKSLASGSLDPDLCTYNSLIHVLCLAG 134

Query: 174 RVKDALVVWEELKNSGHEPDTISYRVIIQGCCKLYKVDDATRIFSEMQYNGIRSDTAI*N 353
           +VKDA++V+EELK SGHEPD  +YR++IQGCCK Y+++DAT+IFSEMQYNG   DT + N
Sbjct: 135 KVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDATKIFSEMQYNGFLPDTVVYN 194

Query: 354 SLLDGMFKARKLKEACQLFERMVQDGIRASCCSYNILIDGLFKNGRAVAAYTIFCDLKKK 533
           SLLDGMFKARK+ EACQLFE+MVQDG+RASC +YNILIDGL KNGRA A Y +FC L KK
Sbjct: 195 SLLDGMFKARKVMEACQLFEKMVQDGVRASCWTYNILIDGLCKNGRAEAGYNLFCGL-KK 253

Query: 534 KGQF 545
           KGQF
Sbjct: 254 KGQF 257



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 48/159 (30%), Positives = 77/159 (48%)
 Frame = +3

Query: 30  NICIHAFGLWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGRVKDALVVWEEL 209
           N  +  F   G    + KLF+   + G   +P   TYNS++      G    A  V+ E+
Sbjct: 438 NTFLSIFLAKGKLSLACKLFEIFTDMGV--DPVSYTYNSIMSSFVKKGYFNRAWDVFNEM 495

Query: 210 KNSGHEPDTISYRVIIQGCCKLYKVDDATRIFSEMQYNGIRSDTAI*NSLLDGMFKARKL 389
                 PD  +Y ++IQG  K+ + D A+ +  ++   G   D  + N+L+D + KA ++
Sbjct: 496 GEKVCPPDIATYNLVIQGLGKMGRADLASSVLDKLMKQGGYLDIVMYNTLIDALGKAGRI 555

Query: 390 KEACQLFERMVQDGIRASCCSYNILIDGLFKNGRAVAAY 506
            EA  LFE+M   G+     +YNI+I+   K GR   AY
Sbjct: 556 DEANNLFEQMKISGLNPDVVTYNIMIEVHSKTGRLKDAY 594



 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 42/143 (29%), Positives = 72/143 (50%)
 Frame = +3

Query: 3   GIELDSWRYNICIHAFGLWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGRVK 182
           G++  S+ YN  + +F   G F  +  +F EM EK     PD+ TYN +I  L  +GR  
Sbjct: 464 GVDPVSYTYNSIMSSFVKKGYFNRAWDVFNEMGEKV--CPPDIATYNLVIQGLGKMGRAD 521

Query: 183 DALVVWEELKNSGHEPDTISYRVIIQGCCKLYKVDDATRIFSEMQYNGIRSDTAI*NSLL 362
            A  V ++L   G   D + Y  +I    K  ++D+A  +F +M+ +G+  D    N ++
Sbjct: 522 LASSVLDKLMKQGGYLDIVMYNTLIDALGKAGRIDEANNLFEQMKISGLNPDVVTYNIMI 581

Query: 363 DGMFKARKLKEACQLFERMVQDG 431
           +   K  +LK+A +  + M+  G
Sbjct: 582 EVHSKTGRLKDAYKFLKMMLDAG 604


>ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|222872045|gb|EEF09176.1|
           predicted protein [Populus trichocarpa]
          Length = 513

 Score =  278 bits (710), Expect = 5e-73
 Identities = 132/184 (71%), Positives = 154/184 (83%), Gaps = 3/184 (1%)
 Frame = +3

Query: 3   GIELDSWRYNICIHAFGLWGDFGTSLKLFKEMKEKGERS---EPDLCTYNSLIHVLCAVG 173
           G EL++W YNICIHAFG WGD  TSL+LFKEMKEK   S   +PDLCTYNSLIHVLC  G
Sbjct: 211 GFELNTWGYNICIHAFGCWGDLTTSLRLFKEMKEKSLASGSLDPDLCTYNSLIHVLCLAG 270

Query: 174 RVKDALVVWEELKNSGHEPDTISYRVIIQGCCKLYKVDDATRIFSEMQYNGIRSDTAI*N 353
           +VKDA++V+EELK SGHEPD  +YR++IQGCCK Y+++D+T+IFSEMQYNG   DT + N
Sbjct: 271 KVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDSTKIFSEMQYNGFLPDTVVYN 330

Query: 354 SLLDGMFKARKLKEACQLFERMVQDGIRASCCSYNILIDGLFKNGRAVAAYTIFCDLKKK 533
           SLLDGMFKARK+ EACQLFE+MVQDG+RASC +YNILIDGL KNGRA A Y +FC L KK
Sbjct: 331 SLLDGMFKARKVMEACQLFEKMVQDGVRASCWTYNILIDGLCKNGRAEAGYNLFCGL-KK 389

Query: 534 KGQF 545
           KGQF
Sbjct: 390 KGQF 393


>ref|XP_002515124.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545604|gb|EEF47108.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 898

 Score =  266 bits (681), Expect = 1e-69
 Identities = 129/184 (70%), Positives = 152/184 (82%), Gaps = 3/184 (1%)
 Frame = +3

Query: 3   GIELDSWRYNICIHAFGLWGDFGTSLKLFKEMKEKGERSE---PDLCTYNSLIHVLCAVG 173
           G ELD+W YNICIHAFG W D GT+L+LFKEMKEK +      PDLCTYNSLI +LC  G
Sbjct: 255 GFELDTWGYNICIHAFGCWSDLGTALRLFKEMKEKSKGFGSCCPDLCTYNSLIRLLCFSG 314

Query: 174 RVKDALVVWEELKNSGHEPDTISYRVIIQGCCKLYKVDDATRIFSEMQYNGIRSDTAI*N 353
           +VKDALVV+EELK SGHEPD  +YR+II+GC K Y+++DAT+IFSEMQYNG   DT + N
Sbjct: 315 KVKDALVVYEELKISGHEPDAFTYRIIIEGCSKSYRMNDATKIFSEMQYNGFVPDTTVYN 374

Query: 354 SLLDGMFKARKLKEACQLFERMVQDGIRASCCSYNILIDGLFKNGRAVAAYTIFCDLKKK 533
           SLLDGMFKARK+ EACQLFE+MVQDG+RAS  +YNILIDGL KNGR+ A Y++FCDL KK
Sbjct: 375 SLLDGMFKARKVTEACQLFEKMVQDGVRASSWTYNILIDGLCKNGRSAAGYSLFCDL-KK 433

Query: 534 KGQF 545
           KG+F
Sbjct: 434 KGKF 437



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
 Frame = +3

Query: 30   NICIHAFGLWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGRVKDALVVWEEL 209
            N  +  F   G    + KLF+   + G    P   TYNS++      G   +A   W+ L
Sbjct: 621  NTFLSIFLAKGKLSVACKLFEIFSDMGVN--PVSYTYNSIMSSFVKKGYFSEA---WDVL 675

Query: 210  KNSGHE---PDTISYRVIIQGCCKLYKVDDATRIFSEMQYNGIRSDTAI*NSLLDGMFKA 380
               G +    D  +Y +IIQG  K+ + D A+ +  ++   G   D  + N+L++ + KA
Sbjct: 676  NQMGEKVCPSDIATYNLIIQGLGKMGRADLASSVLDKLMKQGGYLDIVMYNTLINALGKA 735

Query: 381  RKLKEACQLFERMVQDGIRASCCSYNILIDGLFKNGRAVAAY 506
             ++ E  +LFE+M   GI     +YN LI+   K GR   AY
Sbjct: 736  GRIDEVRKLFEQMKTSGINPDVVTYNTLIEVHTKAGRLKDAY 777



 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 42/143 (29%), Positives = 72/143 (50%)
 Frame = +3

Query: 3    GIELDSWRYNICIHAFGLWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGRVK 182
            G+   S+ YN  + +F   G F  +  +  +M EK   S  D+ TYN +I  L  +GR  
Sbjct: 647  GVNPVSYTYNSIMSSFVKKGYFSEAWDVLNQMGEKVCPS--DIATYNLIIQGLGKMGRAD 704

Query: 183  DALVVWEELKNSGHEPDTISYRVIIQGCCKLYKVDDATRIFSEMQYNGIRSDTAI*NSLL 362
             A  V ++L   G   D + Y  +I    K  ++D+  ++F +M+ +GI  D    N+L+
Sbjct: 705  LASSVLDKLMKQGGYLDIVMYNTLINALGKAGRIDEVRKLFEQMKTSGINPDVVTYNTLI 764

Query: 363  DGMFKARKLKEACQLFERMVQDG 431
            +   KA +LK+A +  + M+  G
Sbjct: 765  EVHTKAGRLKDAYKFLKMMLDAG 787


>ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
           [Vitis vinifera]
          Length = 792

 Score =  266 bits (679), Expect = 2e-69
 Identities = 125/182 (68%), Positives = 151/182 (82%), Gaps = 3/182 (1%)
 Frame = +3

Query: 9   ELDSWRYNICIHAFGLWGDFGTSLKLFKEMKEKGERSE---PDLCTYNSLIHVLCAVGRV 179
           +LD+  YNICIHAFG WGD GT+L LFKEMK+K   S    PDLCTYNSLI VLC VG+V
Sbjct: 229 DLDTQGYNICIHAFGCWGDLGTALNLFKEMKDKSLNSSSFGPDLCTYNSLIRVLCLVGKV 288

Query: 180 KDALVVWEELKNSGHEPDTISYRVIIQGCCKLYKVDDATRIFSEMQYNGIRSDTAI*NSL 359
           KDAL+VWEELK SGHEPD  +YR++IQGC K Y++DDA RIF+EMQYNG   DT + N+L
Sbjct: 289 KDALIVWEELKGSGHEPDAFTYRILIQGCSKSYRMDDAMRIFNEMQYNGFCPDTIVYNTL 348

Query: 360 LDGMFKARKLKEACQLFERMVQDGIRASCCSYNILIDGLFKNGRAVAAYTIFCDLKKKKG 539
           LDG+FKARK+ EACQ+FE+MV+DG+RASC ++NI+I GLF+NGRA A YT+FCDL KKKG
Sbjct: 349 LDGLFKARKVMEACQVFEKMVEDGVRASCWTHNIVICGLFRNGRAAAGYTLFCDL-KKKG 407

Query: 540 QF 545
           +F
Sbjct: 408 KF 409



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 49/159 (30%), Positives = 78/159 (49%)
 Frame = +3

Query: 30   NICIHAFGLWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGRVKDALVVWEEL 209
            N  +  F   G    + KLF+     G   +P + TYNS++      G   +A  V+ E+
Sbjct: 589  NTYLSIFLAKGKLSLACKLFEIFSNMGV--DPVIYTYNSMMTAFVKKGYFNEAWGVFHEM 646

Query: 210  KNSGHEPDTISYRVIIQGCCKLYKVDDATRIFSEMQYNGIRSDTAI*NSLLDGMFKARKL 389
                  PD  +Y VIIQG  K+ + D A+ +   +   G   D  + N+L++ + KA ++
Sbjct: 647  GEKVCPPDIATYNVIIQGLGKMGRADLASAVLDMLMKQGGYLDIVMYNTLINALGKAGRI 706

Query: 390  KEACQLFERMVQDGIRASCCSYNILIDGLFKNGRAVAAY 506
             EA +LFE+M   GI     ++N LI+   K G+  AAY
Sbjct: 707  DEATKLFEQMRSSGINPDVVTFNTLIEIHAKAGQLKAAY 745



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 50/156 (32%), Positives = 78/156 (50%)
 Frame = +3

Query: 3    GIELDSWRYNICIHAFGLWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGRVK 182
            G++   + YN  + AF   G F  +  +F EM EK     PD+ TYN +I  L  +GR  
Sbjct: 615  GVDPVIYTYNSMMTAFVKKGYFNEAWGVFHEMGEKV--CPPDIATYNVIIQGLGKMGRAD 672

Query: 183  DALVVWEELKNSGHEPDTISYRVIIQGCCKLYKVDDATRIFSEMQYNGIRSDTAI*NSLL 362
             A  V + L   G   D + Y  +I    K  ++D+AT++F +M+ +GI  D    N+L+
Sbjct: 673  LASAVLDMLMKQGGYLDIVMYNTLINALGKAGRIDEATKLFEQMRSSGINPDVVTFNTLI 732

Query: 363  DGMFKARKLKEACQLFERMVQDGIRASCCSYNILID 470
            +   KA +LK A +  + M+  G     CS N + D
Sbjct: 733  EIHAKAGQLKAAYKFLKLMLDAG-----CSPNHVTD 763


>ref|XP_002874971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297320808|gb|EFH51230.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 802

 Score =  265 bits (677), Expect = 3e-69
 Identities = 123/183 (67%), Positives = 145/183 (79%), Gaps = 4/183 (2%)
 Frame = +3

Query: 9   ELDSWRYNICIHAFGLWGDFGTSLKLFKEMKEK----GERSEPDLCTYNSLIHVLCAVGR 176
           + D+W YNICIH FG WGD   +L LFKEMKE+    G    PD+CTYNSLIHVLC  G+
Sbjct: 243 KFDTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVSGSSFAPDICTYNSLIHVLCLFGK 302

Query: 177 VKDALVVWEELKNSGHEPDTISYRVIIQGCCKLYKVDDATRIFSEMQYNGIRSDTAI*NS 356
            KDAL+VW+ELK SGHEPD  +YR++IQGCCK Y++DDA RIF EMQYNG   DT + N 
Sbjct: 303 AKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIFGEMQYNGFVPDTVVYNC 362

Query: 357 LLDGMFKARKLKEACQLFERMVQDGIRASCCSYNILIDGLFKNGRAVAAYTIFCDLKKKK 536
           LLDG  KARK+ EACQLFE+MVQ+G+RASC +YNILIDGLF+NGRA A +T+FCDL KKK
Sbjct: 363 LLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDL-KKK 421

Query: 537 GQF 545
           GQF
Sbjct: 422 GQF 424



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 45/141 (31%), Positives = 69/141 (48%)
 Frame = +3

Query: 9    ELDSWRYNICIHAFGLWGDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGRVKDA 188
            +L S+ YN  + +F   G F T   +  +M E       D+ TYN +I  L  +GR   A
Sbjct: 625  DLTSYTYNSMMSSFVKKGYFKTVRGVLDQMGENF--CAADIATYNVIIQGLGKMGRADLA 682

Query: 189  LVVWEELKNSGHEPDTISYRVIIQGCCKLYKVDDATRIFSEMQYNGIRSDTAI*NSLLDG 368
              V + L   G   D + Y  +I    K  ++D AT++F  M+ NGI  D    N++++ 
Sbjct: 683  GAVLDRLTKQGGYLDIVMYNTLINAIGKANRLDAATQLFDHMKSNGINPDVVSYNTMIEV 742

Query: 369  MFKARKLKEACQLFERMVQDG 431
              KA KLKEA +  + M+  G
Sbjct: 743  NSKAGKLKEAYKYLKAMLDAG 763



 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 45/149 (30%), Positives = 71/149 (47%)
 Frame = +3

Query: 60   GDFGTSLKLFKEMKEKGERSEPDLCTYNSLIHVLCAVGRVKDALVVWEELKNSGHEPDTI 239
            GD   + KLF+     G  ++    TYNS++      G  K    V +++  +    D  
Sbjct: 606  GDLSLACKLFEIFNGMGV-TDLTSYTYNSMMSSFVKKGYFKTVRGVLDQMGENFCAADIA 664

Query: 240  SYRVIIQGCCKLYKVDDATRIFSEMQYNGIRSDTAI*NSLLDGMFKARKLKEACQLFERM 419
            +Y VIIQG  K+ + D A  +   +   G   D  + N+L++ + KA +L  A QLF+ M
Sbjct: 665  TYNVIIQGLGKMGRADLAGAVLDRLTKQGGYLDIVMYNTLINAIGKANRLDAATQLFDHM 724

Query: 420  VQDGIRASCCSYNILIDGLFKNGRAVAAY 506
              +GI     SYN +I+   K G+   AY
Sbjct: 725  KSNGINPDVVSYNTMIEVNSKAGKLKEAY 753