BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031655
         (518 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...    84   1e-14
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    78   6e-13
emb|CCA66140.1| hypothetical protein [Beta vulgaris subsp. vulga...    77   1e-12
gb|AAX92720.1| retrotransposon protein, putative, unclassified [...    75   4e-12
gb|AAD37019.2| putative non-LTR retrolelement reverse transcript...    75   7e-12

>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 47/158 (29%), Positives = 81/158 (51%)
 Frame = -1

Query: 500 PFRFEVMWLIDPTCQSVIHDSMNLGYHGSASFVLSRHLALCRKNLSRWNRTHFGNIYHQL 321
           PFRFE MW       S++  +    ++GS  F   +   L + N   WN+T FGNI+ QL
Sbjct: 246 PFRFEKMWCTRKDYDSLVKRTWCTKFYGSHMFNFVQKCKLVKINSKEWNKTQFGNIFRQL 305

Query: 320 ADIKGQLQQIQSVQHRYIGSSNTYEDIEEQEKELLQRYNLLLKRVHMHWGQKARVDKLLF 141
             +  +L++IQ  ++  I  +NT   ++ Q++  L + N LL+    +W QK + D ++ 
Sbjct: 306 RQVDERLEEIQ--RNLLIDHNNT--SLKTQQELFLAKRNKLLEYNTTYWKQKCKSDFMVL 361

Query: 140 HELNTRYFHTSVVKRRHRTHIHRIFDDYGTILTSQDKI 27
            + N++++HT    R++R  I     D    +T  D I
Sbjct: 362 GDTNSKFYHTHASIRKYRNQIKEFIPDNAQPITQPDLI 399


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 49/167 (29%), Positives = 77/167 (46%)
 Frame = -1

Query: 503  RPFRFEVMWLIDPTCQSVIHDSMNLGYHGSASFVLSRHLALCRKNLSRWNRTHFGNIYHQ 324
            R FRFE MW        VI  S    + GSA    +R+L  C K L  W++  F N   Q
Sbjct: 845  RLFRFEQMWTTHEEYSDVIQRSWPPAFGGSAMRSWNRNLLSCGKALKMWSKEKFSNPSVQ 904

Query: 323  LADIKGQLQQIQSVQHRYIGSSNTYEDIEEQEKELLQRYNLLLKRVHMHWGQKARVDKLL 144
            +AD+   ++++           +   D   Q   L  +   L  +  M+W Q++RV+ L 
Sbjct: 905  VADLLSDIEKLHQ---------SNPPDAHHQINILTDQVTKLWTQDEMYWHQRSRVNWLK 955

Query: 143  FHELNTRYFHTSVVKRRHRTHIHRIFDDYGTILTSQDKILHHFEQYF 3
              + N+ +FH + ++RR    I R+ DD+G  L S+  +   F  YF
Sbjct: 956  LGDQNSSFFHQTTIQRRQYNKIVRLKDDHGNWLDSEADVALQFLDYF 1002


>emb|CCA66140.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1381

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 41/142 (28%), Positives = 76/142 (53%)
 Frame = -1

Query: 503 RPFRFEVMWLIDPTCQSVIHDSMNLGYHGSASFVLSRHLALCRKNLSRWNRTHFGNIYHQ 324
           +PFRF+  WL DP C  ++ +     +  S+       L   RK L  WN+  +GNI ++
Sbjct: 237 KPFRFQNCWLSDPNCLKIVKEV----WQASSGVSAVGKLKAVRKRLKVWNQEEYGNIDNR 292

Query: 323 LADIKGQLQQIQSVQHRYIGSSNTYEDIEEQEKELLQRYNLLLKRVHMHWGQKARVDKLL 144
           ++ ++  +QQ   + ++ I    T +++EE++K  ++ +  + KR  ++W Q AR+  L 
Sbjct: 293 ISKMENLIQQYDEISNQRI---LTEDELEEKQKAQVELWKWM-KRREVYWAQNARISWLK 348

Query: 143 FHELNTRYFHTSVVKRRHRTHI 78
             + NTR+FHT    +R +  I
Sbjct: 349 EGDRNTRFFHTIASNKRRKNSI 370


>gb|AAX92720.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|62701880|gb|AAX92953.1|
           retrotransposon protein, putative, unclassified [Oryza
           sativa Japonica Group] gi|77548739|gb|ABA91536.1|
           retrotransposon protein, putative, unclassified [Oryza
           sativa Japonica Group]
          Length = 838

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 40/168 (23%), Positives = 86/168 (51%)
 Frame = -1

Query: 506 YRPFRFEVMWLIDPTCQSVIHDSMNLGYHGSASFVLSRHLALCRKNLSRWNRTHFGNIYH 327
           ++ F+FE+ W +    + ++     + Y+GS+     +     RK L+ WN+   G    
Sbjct: 229 HKSFKFELSWFLREDLKEIVESVWKINYYGSSIERWQKRFRALRKKLNGWNKNWEGRYRR 288

Query: 326 QLADIKGQLQQIQSVQHRYIGSSNTYEDIEEQEKELLQRYNLLLKRVHMHWGQKARVDKL 147
           +   I   L++I+++  +      + ED EE+ KEL  + N +++   + W Q+++  +L
Sbjct: 289 EKESI---LEKIENLDAKVERCGMSREDREER-KELEDKLNFVIREEKIKWFQRSKEKEL 344

Query: 146 LFHELNTRYFHTSVVKRRHRTHIHRIFDDYGTILTSQDKILHHFEQYF 3
           L  + NT+Y+H     R+ +++IH +  + G I   Q+K+L +   ++
Sbjct: 345 LEGDCNTKYYHAKANGRKRKSYIHSLTQEEGEI-EGQEKLLTYITSFY 391


>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 855

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 42/159 (26%), Positives = 81/159 (50%)
 Frame = -1

Query: 503  RPFRFEVMWLIDPTCQSVIHDSMNLGYHGSASFVLSRHLALCRKNLSRWNRTHFGNIYHQ 324
            RPFRFE  WL     + ++  S N       +      LA  +  L +WNR  FG++  +
Sbjct: 655  RPFRFEAAWLTHSGFKDLLQASWNTEGETPVA------LAALKSKLKKWNREVFGDVNRR 708

Query: 323  LADIKGQLQQIQSVQHRYIGSSNTYEDIEEQEKELLQRYNLLLKRVHMHWGQKARVDKLL 144
               +  +++ +Q +        N  +++  +E+EL++ ++++L++  + W QK+R   + 
Sbjct: 709  KESLMNEIKVVQELLE-----INQTDNLLSKEEELIKEFDVVLEQEEVLWFQKSREKWVE 763

Query: 143  FHELNTRYFHTSVVKRRHRTHIHRIFDDYGTILTSQDKI 27
              + NT+YFHT  V RR R  I  +  D G+ ++ Q ++
Sbjct: 764  LGDRNTKYFHTMTVVRRRRNRIEMLKADDGSWVSQQQEL 802