BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031615
         (300 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003612353.1| Pentatricopeptide repeat-containing protein ...    78   1e-15
ref|XP_002534168.1| pentatricopeptide repeat-containing protein,...    64   1e-08
gb|ADE77505.1| unknown [Picea sitchensis]                              63   3e-08
ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat...    62   6e-08
ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [S...    59   4e-07

>ref|XP_003612353.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513688|gb|AES95311.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 795

 Score = 77.8 bits (190), Expect(2) = 1e-15
 Identities = 38/74 (51%), Positives = 50/74 (67%)
 Frame = +2

Query: 77  SFIAIDYRDDISWSSIIGSYVRNGVELEALRLCKEMLATGIYLSCFSLPTCITACSSLAA 256
           +F+ I  +DD SWSSIIG+  +N +E +AL LCKEML  GI  + +SLP CI+ACS L  
Sbjct: 510 AFVDIVRKDDSSWSSIIGTCKQNRMESKALELCKEMLDEGINFTSYSLPLCISACSQLLT 569

Query: 257 LELGKQFQSFVVKS 298
           +  GKQ   F +KS
Sbjct: 570 ISEGKQLHVFAIKS 583



 Score = 29.6 bits (65), Expect(2) = 1e-15
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 6   CHETIVGNAVINMYSTW-SVEDAHKA 80
           C  T+VGNA+++MYS    ++DA KA
Sbjct: 485 CRHTLVGNALVHMYSECKQIDDAFKA 510


>ref|XP_002534168.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525755|gb|EEF28217.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 513

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 33/72 (45%), Positives = 46/72 (63%)
 Frame = +2

Query: 80  FIAIDYRDDISWSSIIGSYVRNGVELEALRLCKEMLATGIYLSCFSLPTCITACSSLAAL 259
           F  +  RD ISWS++I  YV+NG   EA+ L  EM   G  L+  S  + +TAC+ +AAL
Sbjct: 359 FDRMPQRDSISWSAMIAGYVQNGCNEEAVHLYVEMKRDGESLNRSSFTSVLTACADIAAL 418

Query: 260 ELGKQFQSFVVK 295
           +LGKQF  ++VK
Sbjct: 419 DLGKQFHGWLVK 430


>gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 29/73 (39%), Positives = 48/73 (65%)
 Frame = +2

Query: 80  FIAIDYRDDISWSSIIGSYVRNGVELEALRLCKEMLATGIYLSCFSLPTCITACSSLAAL 259
           F  +  RD +SW+++I  Y +NG   E+L +  +M  TG+    F + + ++AC+ LAAL
Sbjct: 99  FYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAAL 158

Query: 260 ELGKQFQSFVVKS 298
           ELG+QF ++VV+S
Sbjct: 159 ELGRQFHAYVVQS 171


>ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 27/73 (36%), Positives = 49/73 (67%)
 Frame = +2

Query: 80  FIAIDYRDDISWSSIIGSYVRNGVELEALRLCKEMLATGIYLSCFSLPTCITACSSLAAL 259
           F AI+ RD I+W++++    +NG+E EAL + + M A G+ +  ++  + +TAC +LAAL
Sbjct: 234 FEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAAL 293

Query: 260 ELGKQFQSFVVKS 298
           E GKQ  +++ ++
Sbjct: 294 EEGKQIHAYITRT 306


>ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
           gi|241932394|gb|EES05539.1| hypothetical protein
           SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 23/67 (34%), Positives = 46/67 (68%)
 Frame = +2

Query: 98  RDDISWSSIIGSYVRNGVELEALRLCKEMLATGIYLSCFSLPTCITACSSLAALELGKQF 277
           RD I+W++++  + +NG+E EAL + + M   GI +  ++  + +TAC +L+ALE GKQ 
Sbjct: 235 RDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQI 294

Query: 278 QSFVVKS 298
            ++++++
Sbjct: 295 HAYIIRT 301