BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031606
         (410 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001004224.1| ribosomal protein S3 [Ranunculus macranthus]...   202   3e-50
ref|YP_002836129.1| ribosomal protein S3 [Megaleranthis saniculi...   197   7e-49
ref|YP_740689.1| ribosomal protein S3 [Nandina domestica] gi|122...   197   7e-49
gb|ADD29950.1| ribosomal protein S3 [Trochodendron aralioides]        196   1e-48
gb|ADD29932.1| ribosomal protein S3 [Meliosma aff. cuneifolia Mo...   196   1e-48

>ref|YP_001004224.1| ribosomal protein S3 [Ranunculus macranthus]
           gi|122239703|sp|Q4FG71.1|RR3_RANMC RecName: Full=30S
           ribosomal protein S3, chloroplastic
           gi|69216141|gb|AAZ03898.1| ribosomal protein S3
           [Ranunculus macranthus] gi|85540842|gb|ABC70794.1|
           ribosomal protein S3 [Ranunculus macranthus]
          Length = 217

 Score =  202 bits (513), Expect = 3e-50
 Identities = 99/102 (97%), Positives = 102/102 (100%)
 Frame = -3

Query: 408 VAKPYGQPNILAEFIAGQLKNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARV 229
           +AKPYGQPNILAEFIAGQLKNRVSFRKA+KKAIELTEQADTKGIQ+QIAGRIDGKEIARV
Sbjct: 116 IAKPYGQPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARV 175

Query: 228 EWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFAGEE 103
           EWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFAGEE
Sbjct: 176 EWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFAGEE 217


>ref|YP_002836129.1| ribosomal protein S3 [Megaleranthis saniculifolia]
           gi|226933921|gb|ACO92054.1| ribosomal protein S3
           [Megaleranthis saniculifolia]
          Length = 218

 Score =  197 bits (501), Expect = 7e-49
 Identities = 98/102 (96%), Positives = 100/102 (98%)
 Frame = -3

Query: 408 VAKPYGQPNILAEFIAGQLKNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARV 229
           V+KPYGQPNILAEFIAGQLKNRVSFRKA+KKAIELTEQADTKGIQVQIAGRIDGKEIARV
Sbjct: 117 VSKPYGQPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARV 176

Query: 228 EWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFAGEE 103
           EWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIF  EE
Sbjct: 177 EWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFTDEE 218


>ref|YP_740689.1| ribosomal protein S3 [Nandina domestica]
           gi|122165923|sp|Q09FS2.1|RR3_NANDO RecName: Full=30S
           ribosomal protein S3, chloroplastic
           gi|114054510|gb|ABI49903.1| ribosomal protein S3
           [Nandina domestica]
          Length = 218

 Score =  197 bits (501), Expect = 7e-49
 Identities = 98/102 (96%), Positives = 99/102 (97%)
 Frame = -3

Query: 408 VAKPYGQPNILAEFIAGQLKNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARV 229
           +AKPYG PNILAEFIAGQLKNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARV
Sbjct: 117 IAKPYGHPNILAEFIAGQLKNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARV 176

Query: 228 EWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFAGEE 103
           EWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIF  EE
Sbjct: 177 EWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFTDEE 218


>gb|ADD29950.1| ribosomal protein S3 [Trochodendron aralioides]
          Length = 218

 Score =  196 bits (499), Expect = 1e-48
 Identities = 97/102 (95%), Positives = 99/102 (97%)
 Frame = -3

Query: 408 VAKPYGQPNILAEFIAGQLKNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARV 229
           +AKPYGQPNILAEFIAGQLKNRVSFRKA+KKAIELTEQADTKGIQVQIAGRIDGKEIARV
Sbjct: 117 IAKPYGQPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARV 176

Query: 228 EWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFAGEE 103
           EWIREGRVPLQTIRAKIDYCSYTVRTIYG LGIKIWIF  EE
Sbjct: 177 EWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218


>gb|ADD29932.1| ribosomal protein S3 [Meliosma aff. cuneifolia Moore 333]
          Length = 218

 Score =  196 bits (499), Expect = 1e-48
 Identities = 97/102 (95%), Positives = 99/102 (97%)
 Frame = -3

Query: 408 VAKPYGQPNILAEFIAGQLKNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARV 229
           +AKPYGQPNILAEFIAGQLKNRVSFRKA+KKAIELTEQADTKGIQVQIAGRIDGKEIARV
Sbjct: 117 IAKPYGQPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARV 176

Query: 228 EWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFAGEE 103
           EWIREGRVPLQTIRAKIDYCSYTVRTIYG LGIKIWIF  EE
Sbjct: 177 EWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218