BLASTX nr result

ID: Coptis23_contig00030200 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00030200
         (613 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002867916.1| kelch repeat-containing F-box family protein...    57   3e-06
ref|XP_002867915.1| hypothetical protein ARALYDRAFT_329577 [Arab...    57   3e-06

>ref|XP_002867916.1| kelch repeat-containing F-box family protein [Arabidopsis lyrata
           subsp. lyrata] gi|297313752|gb|EFH44175.1| kelch
           repeat-containing F-box family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 397

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
 Frame = +1

Query: 346 VDSKVYIIGGLDCDSQMPGYHHIPSSTVQVIDTPS--FGETASMSVGTAMYGGKSSALTA 519
           V S++Y+IGG   DS+       PSSTV+V+D  S  + +  SM++       + +AL  
Sbjct: 147 VGSEIYVIGG-PVDSE-------PSSTVRVLDCCSHTWRDAPSMTIV------RMNALAC 192

Query: 520 VLDGKIYVFGSPAKLTGEPWAEVFDPATNRW 612
             DGKIYV G    L  EPWAEVFD  T  W
Sbjct: 193 FHDGKIYVMGGCQGLEDEPWAEVFDTKTKTW 223


>ref|XP_002867915.1| hypothetical protein ARALYDRAFT_329577 [Arabidopsis lyrata subsp.
           lyrata] gi|297313751|gb|EFH44174.1| hypothetical protein
           ARALYDRAFT_329577 [Arabidopsis lyrata subsp. lyrata]
          Length = 779

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
 Frame = +1

Query: 346 VDSKVYIIGGLDCDSQMPGYHHIPSSTVQVIDTPS--FGETASMSVGTAMYGGKSSALTA 519
           V S++Y+IGG   DS+       PSSTV+V+D  S  + +  SM++       + +AL  
Sbjct: 529 VGSEIYVIGG-PVDSE-------PSSTVRVLDCCSHTWRDAPSMTIV------RMNALAC 574

Query: 520 VLDGKIYVFGSPAKLTGEPWAEVFDPATNRW 612
             DGKIYV G    L  EPWAEVFD  T  W
Sbjct: 575 FHDGKIYVMGGCQGLEDEPWAEVFDTKTKTW 605


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