BLASTX nr result

ID: Coptis23_contig00028097 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028097
         (366 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002334548.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08
ref|XP_002298693.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08
ref|XP_002329863.1| predicted protein [Populus trichocarpa] gi|2...    61   1e-07
emb|CAN80975.1| hypothetical protein VITISV_039739 [Vitis vinifera]    59   4e-07
emb|CAN59866.1| hypothetical protein VITISV_013438 [Vitis vinifera]    57   1e-06

>ref|XP_002334548.1| predicted protein [Populus trichocarpa] gi|222873215|gb|EEF10346.1|
           predicted protein [Populus trichocarpa]
          Length = 307

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 28/62 (45%), Positives = 40/62 (64%)
 Frame = +3

Query: 180 TSIKLDNKNYLAWSQAVRVFLRAKMKHNYLTDDPPDENSPSVETWWSEMSMVMT*LWHSM 359
           +S +L+ +NYL WSQ V+ FL+ K K N+L D+PP    P    W  E SM+M+ LW+S+
Sbjct: 20  SSYRLNGRNYLKWSQIVKTFLKGKGKINHLMDNPPSPEDPKFTLWDEEDSMIMSWLWNSI 79

Query: 360 EP 365
            P
Sbjct: 80  MP 81


>ref|XP_002298693.1| predicted protein [Populus trichocarpa] gi|222845951|gb|EEE83498.1|
           predicted protein [Populus trichocarpa]
          Length = 299

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 28/62 (45%), Positives = 40/62 (64%)
 Frame = +3

Query: 180 TSIKLDNKNYLAWSQAVRVFLRAKMKHNYLTDDPPDENSPSVETWWSEMSMVMT*LWHSM 359
           +S +L+ +NYL WSQ V+ FL+ K K N+L D+PP    P    W  E SM+M+ LW+S+
Sbjct: 20  SSYRLNGRNYLKWSQIVKTFLKGKGKINHLMDNPPSPEDPKFTLWDEEDSMIMSWLWNSI 79

Query: 360 EP 365
            P
Sbjct: 80  MP 81


>ref|XP_002329863.1| predicted protein [Populus trichocarpa] gi|222871100|gb|EEF08231.1|
           predicted protein [Populus trichocarpa]
          Length = 96

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 26/62 (41%), Positives = 40/62 (64%)
 Frame = +3

Query: 180 TSIKLDNKNYLAWSQAVRVFLRAKMKHNYLTDDPPDENSPSVETWWSEMSMVMT*LWHSM 359
           +S +L+ +NYL WS+ V+ FL+ K K N+L D+PP    P    W  E SM+++ LW+S+
Sbjct: 20  SSYRLNERNYLKWSKIVKTFLKGKGKINHLMDNPPSPEDPKFTLWDEEDSMIISWLWNSI 79

Query: 360 EP 365
            P
Sbjct: 80  MP 81


>emb|CAN80975.1| hypothetical protein VITISV_039739 [Vitis vinifera]
          Length = 274

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 35/96 (36%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
 Frame = +3

Query: 90  GKNSSLVISGQSSNSNQPPRYFH--DDIGKQITSIKLDNKNYLAWSQAVRVFLRAKMKHN 263
           G N    IS ++ +++QP   F   D+   QIT+ KL+ KNYL WSQ++++ + ++ K  
Sbjct: 23  GDNPKSEISDKT-HADQPVTAFPGGDNSSLQITAHKLNGKNYLQWSQSIKIVICSRGKFK 81

Query: 264 YLTDD--PPDENSPSVETWWSEMSMVMT*LWHSMEP 365
           Y+T +   P   +P+ + W++E S+V T L +SMEP
Sbjct: 82  YITGEAKAPAPTAPAYKKWFAENSIVHTWLINSMEP 117


>emb|CAN59866.1| hypothetical protein VITISV_013438 [Vitis vinifera]
          Length = 1040

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
 Frame = +3

Query: 87  TGKNSSLVISGQSSNSNQPPRYF-HDDIGKQITSIKLDNKNYLAWSQAVRVFLRAKMKHN 263
           + ++ S+  +   S++NQ    F + D   QIT+ +L+ KNYL WSQ+V + +  + K  
Sbjct: 5   SSQDDSIATTSDQSHANQSVMTFPNGDNSLQITAHRLNGKNYLQWSQSVNIVICGRGKFE 64

Query: 264 YLTDD--PPDENSPSVETWWSEMSMVMT*LWHSMEP 365
           YLT +   P    P+ + W++E S++   L +SMEP
Sbjct: 65  YLTGEANAPAATDPTYKIWFAENSIMHAWLINSMEP 100


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