BLASTX nr result
ID: Coptis23_contig00027811
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00027811
(1338 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI36057.3| unnamed protein product [Vitis vinifera] 444 e-122
ref|XP_002515963.1| DNA repair/transcription protein met18/mms19... 367 5e-99
ref|XP_003597674.1| MMS19 nucleotide excision repair protein-lik... 321 3e-85
ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair ... 318 2e-84
ref|XP_003546956.1| PREDICTED: uncharacterized protein LOC100788... 313 5e-83
>emb|CBI36057.3| unnamed protein product [Vitis vinifera]
Length = 1146
Score = 444 bits (1143), Expect = e-122
Identities = 230/443 (51%), Positives = 307/443 (69%), Gaps = 4/443 (0%)
Frame = -3
Query: 1318 FKNFKTISVENRQKLYALGHMLSASAKVSVACSNKMFQHFFPRLMGTLGLSKKCSTLAC- 1142
F+++ I ++++ KL A+G +L SAK S+ C N++F+ FF RLM TLGLS + S+ C
Sbjct: 378 FRSYNDIPLQSKHKLCAIGRILYVSAKASITCCNRVFESFFFRLMDTLGLSVRNSSGDCL 437
Query: 1141 -DDSSITSENLNFGALYLCIELLAACRGLALSSEEL--HSISVEESWCCLVKKFSGSLSE 971
+ + SE LNFGALYLCIELLAACR L + SEEL S+S +ESWCC++ FS L +
Sbjct: 438 PNFDYVFSERLNFGALYLCIELLAACRDLVVGSEELTSKSVSAQESWCCMLHSFSSLLMK 497
Query: 970 VFQYILVTSTTQEVCEADIHCGVKGLQILATYPRRVSPISESIFENVLTIFVSILAAGCG 791
F +L ST ++ EADI+ GVKGLQILAT+P PIS+SIFENVL F+SI+
Sbjct: 498 AFSSVLDASTDKDAYEADIYSGVKGLQILATFPGEFLPISKSIFENVLLTFISIIVEDFN 557
Query: 790 ETLLWKLTLKALMDIGAFLENFHVSEKALSYMTIVVEKVVSFISRDNSAMPLPLQLEAVS 611
+TLLWKL LKAL+ IG+F++ FH SEKALSY IVVEK+VS + D+ +P L+LEA+S
Sbjct: 558 KTLLWKLALKALVQIGSFIDRFHESEKALSYNYIVVEKIVSLMFLDDFGLPFQLRLEAIS 617
Query: 610 GIGTAGLNFMLRVTQGLEAAISANFFEASVNGNFKSGETLIPLLECFSNKVLPWFAKSGG 431
IGT GLN ML++ QGLE AI AN E V+GN KS + + LLEC+SNK+LP +G
Sbjct: 618 DIGTTGLNVMLKIVQGLEDAIFANLSEVYVHGNLKSAKIAVQLLECYSNKLLPGIHGAGD 677
Query: 430 FEDVAMCFSANIWDQIESNNSFNISDQGKELLDRMMESMKQAVAGCSNSNQGLIVEKAYN 251
FEDV F+ NIW+QIE++ +F++ Q ELL+ M +MK AV CS +QG I++KAY+
Sbjct: 678 FEDVLSRFAVNIWNQIENSMAFSVGAQENELLNATMTAMKLAVGSCSEGSQGKIIKKAYS 737
Query: 250 ILLSSTQFPRKDSLLFSDPMKLEELQVDQSLNTLSCKDKWIIYLFASVIIALRREIHVPN 71
+L S F +S+ + ++LE LQ Q L SC+DKW+I LFAS IIA+R + H+PN
Sbjct: 738 VLSSCPSFTLMESMPITGTVQLEGLQHTQDLECFSCRDKWVISLFASAIIAVRPQTHIPN 797
Query: 70 VRIILKLFMNLLLSGHAPVAQAL 2
+R++L LFM LL GH P AQAL
Sbjct: 798 IRVVLHLFMTNLLKGHVPAAQAL 820
>ref|XP_002515963.1| DNA repair/transcription protein met18/mms19, putative [Ricinus
communis] gi|223544868|gb|EEF46383.1| DNA
repair/transcription protein met18/mms19, putative
[Ricinus communis]
Length = 1174
Score = 367 bits (941), Expect = 5e-99
Identities = 201/459 (43%), Positives = 300/459 (65%), Gaps = 20/459 (4%)
Frame = -3
Query: 1318 FKNFKTISVENRQKLYALGHMLSASAKVSVACSNKMFQHFFPRLMGTLGLSKKCSTLAC- 1142
+K++ IS++++QKL+ +G +L AKVSV+ N++F+ +FPRLM LG+ + ++ AC
Sbjct: 377 YKSYNEISLQSKQKLHMVGRILYVCAKVSVSSCNRIFESYFPRLMEALGILVENTSGACH 436
Query: 1141 -DDSSITSENLNFGALYLCIELLAACRGLALSSEELHS--ISVEESWCCLVKKFSGSLSE 971
+++ + ++ N+G+ YL I+LL ACR L+ SS+ L S IS E++CCL+++FS SL+E
Sbjct: 437 SNENCVKAKQPNYGSFYLSIKLLGACRDLSTSSDNLASQCISTNETYCCLLQRFSTSLTE 496
Query: 970 VFQYILVTSTTQEVCEADIHCGVKGLQILATYPRRVSPISESIFENVLTIFVSILAAGCG 791
F L TST+ + D++ GVKGLQILAT+P +S+ F+N+L F+SI+
Sbjct: 497 TFSAALATSTSGPAQDVDMYLGVKGLQILATFPGGYLFLSKLTFDNILMTFLSIITVDFN 556
Query: 790 ETLLWKLTLKALMDIGAFLENFHVSEKALSYMTIVVEKVVSFISRDNSAMPLPLQLEAVS 611
+TLLW LKAL+ IG+F+ + S+K +SY+ IVV K++ S + +MP L+L A+S
Sbjct: 557 KTLLWNQALKALVQIGSFVHGCNESDKEMSYVDIVVGKMILLASSPDFSMPWSLKLTAIS 616
Query: 610 GIGTAGLNFMLRVTQGLEAAISAN---------------FFEASVNGNFKSGETLIPLLE 476
IG +G +ML+V GLE AI AN + V GN KS + L+ LLE
Sbjct: 617 SIGMSGQKYMLKVFLGLEEAIRANLAEIYVCMIKKKIYVLYSCLVQGNLKSAKILLQLLE 676
Query: 475 CFSNKVLPWFAKSGGFEDVAMCFSANIWDQIESNNSFNISDQGKE-LLDRMMESMKQAVA 299
C+S+++LPW K+ GFE+V M F N+W+QIE+ N+F ++ GKE LLD +M+ MK AVA
Sbjct: 677 CYSDELLPWIQKTEGFEEVLMQFVVNLWNQIENFNAFTVAFHGKESLLDAIMKVMKDAVA 736
Query: 298 GCSNSNQGLIVEKAYNILLSSTQFPRKDSLLFSDPMKLEELQVDQSLNTLSCKDKWIIYL 119
CS +Q +I+ KAY +L SST P K+S L + ++LE + Q ++ LS +D+WI L
Sbjct: 737 FCSVESQNVIIYKAYGVLSSSTFLPLKES-LSENSVQLECFRAIQQMDRLSSRDEWIHSL 795
Query: 118 FASVIIALRREIHVPNVRIILKLFMNLLLSGHAPVAQAL 2
FASVIIALR + H+PN RI+L LF+ LL GH A+AL
Sbjct: 796 FASVIIALRPQTHIPNTRIVLHLFITALLKGHVTTAEAL 834
>ref|XP_003597674.1| MMS19 nucleotide excision repair protein-like protein [Medicago
truncatula] gi|355486722|gb|AES67925.1| MMS19 nucleotide
excision repair protein-like protein [Medicago
truncatula]
Length = 1140
Score = 321 bits (822), Expect = 3e-85
Identities = 183/443 (41%), Positives = 267/443 (60%)
Frame = -3
Query: 1330 SAACFKNFKTISVENRQKLYALGHMLSASAKVSVACSNKMFQHFFPRLMGTLGLSKKCST 1151
S A ++ + TISV+ ++KL+A+G +L SAK S+ N +FQ F R+M LG S
Sbjct: 374 SIASYEMYDTISVQEKKKLHAIGRILYISAKTSIPSCNAVFQSLFLRMMDKLGFSASNID 433
Query: 1150 LACDDSSITSENLNFGALYLCIELLAACRGLALSSEELHSISVEESWCCLVKKFSGSLSE 971
+ + S+++NFG LYLCIELL+ CR L + S+E E++C ++ S L
Sbjct: 434 GLQNGGILASQSVNFGFLYLCIELLSGCRELVILSDEKR-----ETYCTILHSSSAVLFN 488
Query: 970 VFQYILVTSTTQEVCEADIHCGVKGLQILATYPRRVSPISESIFENVLTIFVSILAAGCG 791
F +L + + DI+ GVKGLQILA + V PI +S FEN+L F+SI+ G
Sbjct: 489 AFGSVLAVTADRCPSHPDIYIGVKGLQILAMFHLDVFPIPKSTFENILKKFMSIIIEDFG 548
Query: 790 ETLLWKLTLKALMDIGAFLENFHVSEKALSYMTIVVEKVVSFISRDNSAMPLPLQLEAVS 611
+T+LW TLKAL IG+F++ F SEKA+SY + VV+K++ +S D+ A+P L++EA+
Sbjct: 549 QTVLWNATLKALFHIGSFVQKFSESEKAMSYRSFVVDKIMEMLSLDDIALPFSLKVEALY 608
Query: 610 GIGTAGLNFMLRVTQGLEAAISANFFEASVNGNFKSGETLIPLLECFSNKVLPWFAKSGG 431
IG G+ ML + Q +E AI N E V+ N S ET + LLEC+S K+LPW K+GG
Sbjct: 609 DIGMTGMKNMLTILQAMEGAIFTNLSE--VHSNLTSHETAVQLLECYSCKLLPWILKNGG 666
Query: 430 FEDVAMCFSANIWDQIESNNSFNISDQGKELLDRMMESMKQAVAGCSNSNQGLIVEKAYN 251
E+ + F+ +IW+Q + FN + K LLD MM++MK +V CS +Q + ++KAY+
Sbjct: 667 AEEFVVQFAVDIWNQAGNCMDFNSPFEDKGLLDAMMKAMKVSVGCCSVESQNVTIQKAYS 726
Query: 250 ILLSSTQFPRKDSLLFSDPMKLEELQVDQSLNTLSCKDKWIIYLFASVIIALRREIHVPN 71
L S T+F D + L + +S +D+ I+ LFASVIIALR + H+PN
Sbjct: 727 TLSSHTKFQLND---------VGRLPLTSGKYDISPRDEGILLLFASVIIALRPKTHIPN 777
Query: 70 VRIILKLFMNLLLSGHAPVAQAL 2
+R +L LF+ LL G PVAQAL
Sbjct: 778 IRGLLHLFIITLLKGVVPVAQAL 800
>ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair protein homolog [Cucumis
sativus]
Length = 1147
Score = 318 bits (815), Expect = 2e-84
Identities = 180/442 (40%), Positives = 277/442 (62%), Gaps = 2/442 (0%)
Frame = -3
Query: 1321 CFKNFKTISVENRQKLYALGHMLSASAKVSVACSNKMFQHFFPRLMGTLGLSKKCSTLAC 1142
C+K+F +++RQ+L A+GH+L SA SVA + +F+ +F RL+ +G+S
Sbjct: 380 CYKDFP---LQSRQRLNAVGHILYTSASASVASCDHVFESYFHRLLDFMGISVDQYH--- 433
Query: 1141 DDSSITSENLNFGALYLCIELLAACRGLALSSEELHSISVEESWCCLVKKFSGSLSEVFQ 962
+D NLNFGALYLCIE++AACR L +SS+E ++ SV+E +++ FS S+ ++
Sbjct: 434 NDKISPIRNLNFGALYLCIEVIAACRNLIVSSDE-NTCSVKEKSYSMLQIFSCSVVQLLS 492
Query: 961 YILVTSTTQEVCEADIHCGVKGLQILATYPRRVSPISESIFENVLTIFVSILAAGCGETL 782
+++ +A+ +C VKGL L+T+P SP+S IFE++L F+S +
Sbjct: 493 STFSGIVKRDLHDAEFYCAVKGLLNLSTFPVGSSPVSRVIFEDILLEFMSFITVNFKFGS 552
Query: 781 LWKLTLKALMDIGAFLENFHVSEKALSYMTIVVEKVVSFISRDNSAMPLPLQLEAVSGIG 602
LW LKAL IG+F++ + S ++ SYM IVVEK+ S + +PL L+LE IG
Sbjct: 553 LWNHALKALQHIGSFVDKYPGSVESQSYMHIVVEKIALMFSPHDEVLPLMLKLEMAVDIG 612
Query: 601 TAGLNFMLRVTQGLEAAISANFFEASVNGNFKSGETLIPLLECFSNKVLPWFAKSGGFED 422
G ++ML++ G+E I N E V GN KS E ++ LL+C+S K+LPWF ++G FE+
Sbjct: 613 RTGRSYMLKIVGGIEETIFYNLSEVYVYGNSKSVEIVLSLLDCYSTKILPWFDEAGDFEE 672
Query: 421 VAMCFSANIWDQIESNNSFNISDQG--KELLDRMMESMKQAVAGCSNSNQGLIVEKAYNI 248
V + F+ NIWDQIE ++F+ S + LLD M ++K +V CS +Q +IV+KA+N+
Sbjct: 673 VILRFALNIWDQIEKCSTFSTSMDKCIQVLLDATMMALKLSVRSCSKESQNIIVQKAFNV 732
Query: 247 LLSSTQFPRKDSLLFSDPMKLEELQVDQSLNTLSCKDKWIIYLFASVIIALRREIHVPNV 68
LL+S+ P K +L + P+++E LQ Q + + +D+WI+ LFASV IALR ++HVP+V
Sbjct: 733 LLTSSFSPLKVTLSNTIPVQMEGLQFLQQKDNPTSRDEWILSLFASVTIALRPQVHVPDV 792
Query: 67 RIILKLFMNLLLSGHAPVAQAL 2
R+I++L M G P AQAL
Sbjct: 793 RLIIRLLMLSTTRGCVPAAQAL 814
>ref|XP_003546956.1| PREDICTED: uncharacterized protein LOC100788537 [Glycine max]
Length = 1135
Score = 313 bits (803), Expect = 5e-83
Identities = 176/441 (39%), Positives = 264/441 (59%), Gaps = 2/441 (0%)
Frame = -3
Query: 1318 FKNFKTISVENRQKLYALGHMLSASAKVSVACSNKMFQHFFPRLMGTLGLSKKCSTLACD 1139
++ + I V+ ++KL+A+G +L ++K +++ N MF+ F R+M LG S +
Sbjct: 378 YETYDAIPVQEKKKLHAIGRILYITSKTTISSCNAMFESLFTRMMDNLGFSVRFPN---G 434
Query: 1138 DSSITSENLNFGALYLCIELLAACRGLALSSEE--LHSISVEESWCCLVKKFSGSLSEVF 965
D S S+ L FG LYLCIELLA CR L + SEE L + E+ C ++ FS L F
Sbjct: 435 DIS-PSQRLKFGFLYLCIELLAGCRELIVGSEEPALQYVFEHETCCTMLHSFSTPLFNAF 493
Query: 964 QYILVTSTTQEVCEADIHCGVKGLQILATYPRRVSPISESIFENVLTIFVSILAAGCGET 785
+L S + + D + GVKGLQILA + V PI +SIFEN+L F+SI+ +T
Sbjct: 494 GSVLAVSADRGPLDPDTYVGVKGLQILAMFHSDVFPIQKSIFENILKKFMSIIIEDFNKT 553
Query: 784 LLWKLTLKALMDIGAFLENFHVSEKALSYMTIVVEKVVSFISRDNSAMPLPLQLEAVSGI 605
+LW+ LKAL +G+F + F SEKA+SY +VVEK+V +S D+ + L++EA+ I
Sbjct: 554 ILWEAALKALHHVGSFFQKFCESEKAMSYRNLVVEKIVEILSLDDITLSFSLKVEALLNI 613
Query: 604 GTAGLNFMLRVTQGLEAAISANFFEASVNGNFKSGETLIPLLECFSNKVLPWFAKSGGFE 425
G G+ ML + QGL A+ AN + V+ N +S E + LLEC+S ++LPW ++GG E
Sbjct: 614 GKTGMKNMLTILQGLGRAVFANLSKVYVHRNLRSSEIAVQLLECYSCQLLPWIHENGGSE 673
Query: 424 DVAMCFSANIWDQIESNNSFNISDQGKELLDRMMESMKQAVAGCSNSNQGLIVEKAYNIL 245
D M F+ +IW Q + + +GK LLD MM++M+ +V CS +Q LI+ KAY++L
Sbjct: 674 DFVMQFAVDIWSQAGNCMDLSTPFEGKGLLDAMMKAMRLSVGSCSVESQNLIIRKAYSVL 733
Query: 244 LSSTQFPRKDSLLFSDPMKLEELQVDQSLNTLSCKDKWIIYLFASVIIALRREIHVPNVR 65
S T F K+ +E L + +S +D+ II LFASV+IA+ + ++PN+R
Sbjct: 734 SSHTNFQLKE---------VERLPLTPGKYDISLRDEGIISLFASVVIAVCPKTYIPNIR 784
Query: 64 IILKLFMNLLLSGHAPVAQAL 2
+++ LF+ LL G PVAQAL
Sbjct: 785 VLVHLFIITLLRGVVPVAQAL 805