BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027390
         (520 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    59   1e-11
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 59   1e-11
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    54   3e-11
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    57   1e-10
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...    54   2e-10

>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score = 58.5 bits (140), Expect(2) = 1e-11
 Identities = 25/67 (37%), Positives = 41/67 (61%)
 Frame = +1

Query: 91   VERIICTIKNWKARQLSHTRRIQLIRSVLTTFHVYWSRTFILPSIVLDEITKICNKFLWS 270
            ++++   I +W AR LS+  R+ LI SV+ +   +W   + LP+  + EI K+C+ FLWS
Sbjct: 932  LDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWS 991

Query: 271  GREMKKK 291
            G E+  K
Sbjct: 992  GPELNPK 998



 Score = 35.4 bits (80), Expect(2) = 1e-11
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 324  KKEGGMNILVLKIRNKAAYCGPVFKIVSKNDCLWLK*IWVQLIKTSFF 467
            K+EGG+ I  L   NK +    ++++VS+   LW+  +W  +I+   F
Sbjct: 1011 KQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSF 1058


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 58.5 bits (140), Expect(2) = 1e-11
 Identities = 25/67 (37%), Positives = 41/67 (61%)
 Frame = +1

Query: 91  VERIICTIKNWKARQLSHTRRIQLIRSVLTTFHVYWSRTFILPSIVLDEITKICNKFLWS 270
           ++++   I +W AR LS+  R+ LI SV+ +   +W   + LP+  + EI K+C+ FLWS
Sbjct: 363 LDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWS 422

Query: 271 GREMKKK 291
           G E+  K
Sbjct: 423 GPELNPK 429



 Score = 35.4 bits (80), Expect(2) = 1e-11
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 324 KKEGGMNILVLKIRNKAAYCGPVFKIVSKNDCLWLK*IWVQLIKTSFF 467
           K+EGG+ I  L   NK +    ++++VS+   LW+  +W  +I+   F
Sbjct: 442 KQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSF 489


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 53.5 bits (127), Expect(3) = 3e-11
 Identities = 27/64 (42%), Positives = 38/64 (59%)
 Frame = +1

Query: 91  VERIICTIKNWKARQLSHTRRIQLIRSVLTTFHVYWSRTFILPSIVLDEITKICNKFLWS 270
           +E+I   I  W AR LS+  R+ L+ SVL +   +W   F LP   + EI K+C+ FLWS
Sbjct: 308 LEQIKRRIGTWTARFLSYAGRLNLVSSVLWSICNFWLSAFRLPRECVREIDKLCSAFLWS 367

Query: 271 GREM 282
           G E+
Sbjct: 368 GPEL 371



 Score = 33.9 bits (76), Expect(3) = 3e-11
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 324 KKEGGMNILVLKIRNKAAYCGPVFKIVSKNDCLWLK*IWVQLIKTSFF 467
           K+EGG+ +  +K  N       +++IVS+ D LW++ I   L+K + F
Sbjct: 387 KREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTF 434



 Score = 24.6 bits (52), Expect(3) = 3e-11
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 452 KNKLFWTMKMPKDCSWAWRNIL 517
           K   FW+ +     SW W+ +L
Sbjct: 430 KRNTFWSFRSASQGSWMWKKLL 451


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 57.4 bits (137), Expect(2) = 1e-10
 Identities = 29/67 (43%), Positives = 40/67 (59%)
 Frame = +1

Query: 91   VERIICTIKNWKARQLSHTRRIQLIRSVLTTFHVYWSRTFILPSIVLDEITKICNKFLWS 270
            VE+I   I +W  R LS   R+QLI+SVL++   +W   F LP   L EI K+ + FLWS
Sbjct: 937  VEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWS 996

Query: 271  GREMKKK 291
            G ++  K
Sbjct: 997  GPDLNTK 1003



 Score = 33.5 bits (75), Expect(2) = 1e-10
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 324  KKEGGMNILVLKIRNKAAYCGPVFKIVSKNDCLWLK*IWVQLIKTSFF 467
            K+EGG+ +  LK  N+ +    +++I+S  D LW+K +   LI+   F
Sbjct: 1016 KEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETF 1063


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score = 53.9 bits (128), Expect(2) = 2e-10
 Identities = 26/64 (40%), Positives = 39/64 (60%)
 Frame = +1

Query: 91  VERIICTIKNWKARQLSHTRRIQLIRSVLTTFHVYWSRTFILPSIVLDEITKICNKFLWS 270
           ++ I   I +W AR LS+T R+ LI S+L +   +W   F LP   + EI K+C+ +LWS
Sbjct: 120 IDHIKQKICSWSARFLSYTGRLNLISSILWSICNFWMGAFRLPRDCIREIDKMCSAYLWS 179

Query: 271 GREM 282
           G E+
Sbjct: 180 GGEL 183



 Score = 36.2 bits (82), Expect(2) = 2e-10
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +3

Query: 270 WARDEKENASCKKSTSLT---KKEGGMNILVLKIRNKAAYCGPVFKIVSKNDCLWLK*IW 440
           W+  E   +  K + +     K+EGG+ +  LK  N       +++I+S  D LW+K I 
Sbjct: 178 WSGGELNTSKAKIAWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQ 237

Query: 441 VQLIKTSFF 467
             L+K  FF
Sbjct: 238 SSLLKKVFF 246