BLASTX nr result
ID: Coptis23_contig00025221
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00025221
(420 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-l... 209 2e-52
ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-l... 209 2e-52
ref|XP_002300896.1| predicted protein [Populus trichocarpa] gi|2... 203 1e-50
ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylat... 202 2e-50
emb|CBI29360.3| unnamed protein product [Vitis vinifera] 202 2e-50
>ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 209 bits (532), Expect = 2e-52
Identities = 103/140 (73%), Positives = 120/140 (85%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNGQSKGYGFVQFESEEAAQNAIKGLD 241
VFIKNLDT+IDNKAL+D F AFG VLSCKV D++GQSKGYGFVQF++EEAAQNAIK L+
Sbjct: 125 VFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLN 184
Query: 240 KTLINDKEVYVGLFVRRQERSQADRSSMFTNVYVKNLSETTSDEDLKKVFGHYGPVTSAV 61
LINDK+VYVGLF+RRQER Q + S FTNVYVKNLSET +DEDLKK+FG YG +TSA
Sbjct: 185 GMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSAT 244
Query: 60 VIRDGNGNSQGFGFVNFENP 1
V++D NG S+ FGFVNF+NP
Sbjct: 245 VMKDVNGKSRCFGFVNFQNP 264
Score = 102 bits (254), Expect = 3e-20
Identities = 57/153 (37%), Positives = 90/153 (58%), Gaps = 13/153 (8%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNGQSKGYGFVQFESEEAAQNAIKGLD 241
V++KNL ++ L F +G + S V +D NG+S+ +GFV F++ ++A A++ L+
Sbjct: 216 VYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLN 275
Query: 240 KTLIN-DKEVYVGLFVRRQERS-------QADRSSMF-----TNVYVKNLSETTSDEDLK 100
T IN D+ +YVG R+ ER + +R S + N+Y+KNL ++ SDE LK
Sbjct: 276 GTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLK 335
Query: 99 KVFGHYGPVTSAVVIRDGNGNSQGFGFVNFENP 1
+F +G +TS V+ D NG S+G GFV+F P
Sbjct: 336 DLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTP 368
Score = 78.2 bits (191), Expect = 7e-13
Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 1/140 (0%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERD-TNGQSKGYGFVQFESEEAAQNAIKGL 244
+++ +L+ ++ + LYD F + S +V RD T S GY +V F + + A NA++ L
Sbjct: 37 LYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELL 96
Query: 243 DKTLINDKEVYVGLFVRRQERSQADRSSMFTNVYVKNLSETTSDEDLKKVFGHYGPVTSA 64
+ T +N K + + +R + R S NV++KNL + ++ L F +G V S
Sbjct: 97 NFTPLNGKPIRIMF----SQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSC 152
Query: 63 VVIRDGNGNSQGFGFVNFEN 4
V D +G S+G+GFV F+N
Sbjct: 153 KVALDSSGQSKGYGFVQFDN 172
Score = 71.2 bits (173), Expect = 8e-11
Identities = 34/80 (42%), Positives = 51/80 (63%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNGQSKGYGFVQFESEEAAQNAIKGLD 241
+++KNLD + ++ L D F FG + SCKV D+NG+SKG GFV F + E A A+ ++
Sbjct: 320 LYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMN 379
Query: 240 KTLINDKEVYVGLFVRRQER 181
LI K +YV + R++ER
Sbjct: 380 GKLIGRKPLYVAVAQRKEER 399
>ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 209 bits (532), Expect = 2e-52
Identities = 103/140 (73%), Positives = 120/140 (85%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNGQSKGYGFVQFESEEAAQNAIKGLD 241
VFIKNLDT+IDNKAL+D F AFG VLSCKV D++GQSKGYGFVQF++EEAAQNAIK L+
Sbjct: 125 VFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLN 184
Query: 240 KTLINDKEVYVGLFVRRQERSQADRSSMFTNVYVKNLSETTSDEDLKKVFGHYGPVTSAV 61
LINDK+VYVGLF+RRQER Q + S FTNVYVKNLSET +DEDLKK+FG YG +TSA
Sbjct: 185 GMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSAT 244
Query: 60 VIRDGNGNSQGFGFVNFENP 1
V++D NG S+ FGFVNF+NP
Sbjct: 245 VMKDVNGKSRCFGFVNFQNP 264
Score = 102 bits (254), Expect = 3e-20
Identities = 57/153 (37%), Positives = 90/153 (58%), Gaps = 13/153 (8%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNGQSKGYGFVQFESEEAAQNAIKGLD 241
V++KNL ++ L F +G + S V +D NG+S+ +GFV F++ ++A A++ L+
Sbjct: 216 VYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLN 275
Query: 240 KTLIN-DKEVYVGLFVRRQERS-------QADRSSMF-----TNVYVKNLSETTSDEDLK 100
T IN D+ +YVG R+ ER + +R S + N+Y+KNL ++ SDE LK
Sbjct: 276 GTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLK 335
Query: 99 KVFGHYGPVTSAVVIRDGNGNSQGFGFVNFENP 1
+F +G +TS V+ D NG S+G GFV+F P
Sbjct: 336 DLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTP 368
Score = 78.2 bits (191), Expect = 7e-13
Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 1/140 (0%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERD-TNGQSKGYGFVQFESEEAAQNAIKGL 244
+++ +L+ ++ + LYD F + S +V RD T S GY +V F + + A NA++ L
Sbjct: 37 LYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELL 96
Query: 243 DKTLINDKEVYVGLFVRRQERSQADRSSMFTNVYVKNLSETTSDEDLKKVFGHYGPVTSA 64
+ T +N K + + +R + R S NV++KNL + ++ L F +G V S
Sbjct: 97 NFTPLNGKPIRIMF----SQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSC 152
Query: 63 VVIRDGNGNSQGFGFVNFEN 4
V D +G S+G+GFV F+N
Sbjct: 153 KVALDSSGQSKGYGFVQFDN 172
Score = 71.2 bits (173), Expect = 8e-11
Identities = 34/80 (42%), Positives = 51/80 (63%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNGQSKGYGFVQFESEEAAQNAIKGLD 241
+++KNLD + ++ L D F FG + SCKV D+NG+SKG GFV F + E A A+ ++
Sbjct: 320 LYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMN 379
Query: 240 KTLINDKEVYVGLFVRRQER 181
LI K +YV + R++ER
Sbjct: 380 GKLIGRKPLYVAVAQRKEER 399
>ref|XP_002300896.1| predicted protein [Populus trichocarpa] gi|222842622|gb|EEE80169.1|
predicted protein [Populus trichocarpa]
Length = 648
Score = 203 bits (516), Expect = 1e-50
Identities = 99/140 (70%), Positives = 117/140 (83%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNGQSKGYGFVQFESEEAAQNAIKGLD 241
VFIKNLDT IDNKALY+ F +FG VLSCKV D NGQSKGYGF+QFE+EE AQ+AI L+
Sbjct: 123 VFIKNLDTKIDNKALYETFASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLN 182
Query: 240 KTLINDKEVYVGLFVRRQERSQADRSSMFTNVYVKNLSETTSDEDLKKVFGHYGPVTSAV 61
L+ND+EVYVG FVRR ER +A+ S FTNVYVKNLSETTSDEDLKK+F YG +TSA+
Sbjct: 183 GMLVNDREVYVGPFVRRLERIEANGSPKFTNVYVKNLSETTSDEDLKKIFSSYGAITSAI 242
Query: 60 VIRDGNGNSQGFGFVNFENP 1
V++D NG S+GFGFVNF++P
Sbjct: 243 VMKDQNGKSRGFGFVNFQSP 262
Score = 102 bits (253), Expect = 4e-20
Identities = 56/152 (36%), Positives = 89/152 (58%), Gaps = 12/152 (7%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNGQSKGYGFVQFESEEAAQNAIKGLD 241
V++KNL ++ L F ++GA+ S V +D NG+S+G+GFV F+S ++A A++ L+
Sbjct: 214 VYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLN 273
Query: 240 KTLINDKEVYVGLFVRRQERS-------QADRSSMF-----TNVYVKNLSETTSDEDLKK 97
+DK YVG R+ ER + +R+S + N+Y+KNL +T +E LK+
Sbjct: 274 GMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDEERLKE 333
Query: 96 VFGHYGPVTSAVVIRDGNGNSQGFGFVNFENP 1
+F +G +TS V+ D G S+G GFV F P
Sbjct: 334 LFSEFGSITSCKVMLDQQGLSKGSGFVAFSTP 365
Score = 79.0 bits (193), Expect = 4e-13
Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 1/140 (0%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNG-QSKGYGFVQFESEEAAQNAIKGL 244
+++ +L+ + L+D F V+S +V RD G S GY +V F + + A A++ L
Sbjct: 35 LYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAMEVL 94
Query: 243 DKTLINDKEVYVGLFVRRQERSQADRSSMFTNVYVKNLSETTSDEDLKKVFGHYGPVTSA 64
+ T +N K + + R R S NV++KNL ++ L + F +GPV S
Sbjct: 95 NFTPLNGKPIRIMF----SHRDPTTRRSGHANVFIKNLDTKIDNKALYETFASFGPVLSC 150
Query: 63 VVIRDGNGNSQGFGFVNFEN 4
V D NG S+G+GF+ FEN
Sbjct: 151 KVAVDNNGQSKGYGFIQFEN 170
Score = 67.4 bits (163), Expect = 1e-09
Identities = 33/80 (41%), Positives = 48/80 (60%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNGQSKGYGFVQFESEEAAQNAIKGLD 241
+++KNL ID + L + F FG++ SCKV D G SKG GFV F + E A A+ ++
Sbjct: 317 LYLKNLGDTIDEERLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMN 376
Query: 240 KTLINDKEVYVGLFVRRQER 181
+I K +YV + RR+ER
Sbjct: 377 GKMIGKKPLYVAIAQRREER 396
>ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 202 bits (514), Expect = 2e-50
Identities = 100/139 (71%), Positives = 116/139 (83%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNGQSKGYGFVQFESEEAAQNAIKGLD 241
VFIKNLD +IDNKAL D F AFG VLSCK+ D NGQSKGYGFVQFE EEAAQNAIK L+
Sbjct: 563 VFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLN 622
Query: 240 KTLINDKEVYVGLFVRRQERSQADRSSMFTNVYVKNLSETTSDEDLKKVFGHYGPVTSAV 61
LINDK+VYVGLFVR QER++ + S FTNVYVKNLSETT+D+DLK +FG YG +TSAV
Sbjct: 623 GMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAV 682
Query: 60 VIRDGNGNSQGFGFVNFEN 4
V+RD +G S+ FGFVNF++
Sbjct: 683 VMRDASGMSKCFGFVNFQS 701
Score = 98.6 bits (244), Expect = 5e-19
Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 13/153 (8%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNGQSKGYGFVQFESEEAAQNAIKGLD 241
V++KNL + L + F +G++ S V RD +G SK +GFV F+S ++A A++ L+
Sbjct: 654 VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLN 713
Query: 240 KTLINDKEV-YVGLFVRRQERS-------QADRSSMF-----TNVYVKNLSETTSDEDLK 100
ND +V YVG R+ ER + +R + F TN+Y+KNL ++ +DE LK
Sbjct: 714 GATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKLK 773
Query: 99 KVFGHYGPVTSAVVIRDGNGNSQGFGFVNFENP 1
++F +G +TS V+ D G S+G GFV F P
Sbjct: 774 ELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTP 806
Score = 88.2 bits (217), Expect = 6e-16
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERD-TNGQSKGYGFVQFESEEAAQNAIKGL 244
+++ +LDTAI LYD F VLS +V RD S GY +V F S + A NA++ L
Sbjct: 475 LYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHL 534
Query: 243 DKTLINDKEVYVGLFVRRQERSQADRSSMFTNVYVKNLSETTSDEDLKKVFGHYGPVTSA 64
+ T +N K + + R + R S F NV++KNL + ++ L F +G V S
Sbjct: 535 NFTPLNGKPIRIMF----SHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSC 590
Query: 63 VVIRDGNGNSQGFGFVNFE 7
+ D NG S+G+GFV FE
Sbjct: 591 KIALDNNGQSKGYGFVQFE 609
Score = 64.3 bits (155), Expect = 1e-08
Identities = 31/80 (38%), Positives = 50/80 (62%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNGQSKGYGFVQFESEEAAQNAIKGLD 241
+++KNLD +++++ L + F FG + SCKV D G SKG GFV F + E A A+ ++
Sbjct: 758 LYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMN 817
Query: 240 KTLINDKEVYVGLFVRRQER 181
+I K +YV + R++ER
Sbjct: 818 GKMIGRKPLYVAVAQRKEER 837
>emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 202 bits (514), Expect = 2e-50
Identities = 100/139 (71%), Positives = 116/139 (83%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNGQSKGYGFVQFESEEAAQNAIKGLD 241
VFIKNLD +IDNKAL D F AFG VLSCK+ D NGQSKGYGFVQFE EEAAQNAIK L+
Sbjct: 103 VFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLN 162
Query: 240 KTLINDKEVYVGLFVRRQERSQADRSSMFTNVYVKNLSETTSDEDLKKVFGHYGPVTSAV 61
LINDK+VYVGLFVR QER++ + S FTNVYVKNLSETT+D+DLK +FG YG +TSAV
Sbjct: 163 GMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAV 222
Query: 60 VIRDGNGNSQGFGFVNFEN 4
V+RD +G S+ FGFVNF++
Sbjct: 223 VMRDASGMSKCFGFVNFQS 241
Score = 98.6 bits (244), Expect = 5e-19
Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 13/153 (8%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNGQSKGYGFVQFESEEAAQNAIKGLD 241
V++KNL + L + F +G++ S V RD +G SK +GFV F+S ++A A++ L+
Sbjct: 194 VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLN 253
Query: 240 KTLINDKEV-YVGLFVRRQERS-------QADRSSMF-----TNVYVKNLSETTSDEDLK 100
ND +V YVG R+ ER + +R + F TN+Y+KNL ++ +DE LK
Sbjct: 254 GATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKLK 313
Query: 99 KVFGHYGPVTSAVVIRDGNGNSQGFGFVNFENP 1
++F +G +TS V+ D G S+G GFV F P
Sbjct: 314 ELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTP 346
Score = 88.2 bits (217), Expect = 6e-16
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERD-TNGQSKGYGFVQFESEEAAQNAIKGL 244
+++ +LDTAI LYD F VLS +V RD S GY +V F S + A NA++ L
Sbjct: 15 LYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHL 74
Query: 243 DKTLINDKEVYVGLFVRRQERSQADRSSMFTNVYVKNLSETTSDEDLKKVFGHYGPVTSA 64
+ T +N K + + R + R S F NV++KNL + ++ L F +G V S
Sbjct: 75 NFTPLNGKPIRIMF----SHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSC 130
Query: 63 VVIRDGNGNSQGFGFVNFE 7
+ D NG S+G+GFV FE
Sbjct: 131 KIALDNNGQSKGYGFVQFE 149
Score = 64.3 bits (155), Expect = 1e-08
Identities = 31/80 (38%), Positives = 50/80 (62%)
Frame = -1
Query: 420 VFIKNLDTAIDNKALYDKFYAFGAVLSCKVERDTNGQSKGYGFVQFESEEAAQNAIKGLD 241
+++KNLD +++++ L + F FG + SCKV D G SKG GFV F + E A A+ ++
Sbjct: 298 LYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMN 357
Query: 240 KTLINDKEVYVGLFVRRQER 181
+I K +YV + R++ER
Sbjct: 358 GKMIGRKPLYVAVAQRKEER 377