BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00025187
         (346 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEP33757.1| organelle transcript processing 82, partial [Aeth...   102   3e-20
gb|AEP33770.1| organelle transcript processing 82, partial [Raph...   101   7e-20
gb|AEP33763.1| organelle transcript processing 82, partial [Isat...   100   1e-19
gb|AEP33760.1| organelle transcript processing 82, partial [Caps...   100   1e-19
ref|XP_002892433.1| pentatricopeptide repeat-containing protein ...   100   1e-19

>gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  102 bits (254), Expect = 3e-20
 Identities = 54/116 (46%), Positives = 77/116 (66%), Gaps = 3/116 (2%)
 Frame = +1

Query: 1   LDYALLVFEQLEEPNIFMWNTMIRGYAGSESPKRSISFYTGMRERGMVPNNYTFTFLIKA 180
           L YA+ VF+ ++EPN   WNTMIRG+A S  P  +++ Y  M   G+ PN+YTF FL K+
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87

Query: 181 CASSNSS--GPAVHAQSIVFGIPDSDVHVYTSLLNMYAL-GNVEIARKVFDRMKYK 339
           CA S ++  G  +HAQ + +G+   D+HV+TSL++MYA  G VE A KVFD   ++
Sbjct: 88  CAKSKAAQEGKQIHAQILKYGL-TVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHR 142



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
 Frame = +1

Query: 19  VFEQLEEPNIFMWNTMIRGYAGSESPKRSISFYTGMRERGMVPNNYTFTFLIKACASSNS 198
           +FE L+  ++  WNT+I GYA     K ++  +  M + G  PN+ T   ++ ACA   +
Sbjct: 267 LFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGA 326

Query: 199 SGPA----VHAQSIVFGIPDSDVHVYTSLLNMYA-LGNVEIARKVFDRMKYKT 342
                   V+    + GI  ++  + TSL++MYA  GN+E A +VFD +  K+
Sbjct: 327 IDIGRWIHVYIDKKLKGI-ITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKS 378


>gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  101 bits (251), Expect = 7e-20
 Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 3/116 (2%)
 Frame = +1

Query: 1   LDYALLVFEQLEEPNIFMWNTMIRGYAGSESPKRSISFYTGMRERGMVPNNYTFTFLIKA 180
           L YA+ VFE ++EPN+ +WNTM+RG+A S  P  ++  Y  M   G +PN+Y+F FL+K+
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 181 CASSNS--SGPAVHAQSIVFGIPDSDVHVYTSLLNMYAL-GNVEIARKVFDRMKYK 339
           CA S +   G  +HAQ +  G    D +V+TSL++MYA  G +E ARKVFD   ++
Sbjct: 74  CAKSKAFEEGRQIHAQVLKLGC-GLDRYVHTSLISMYARNGGLEDARKVFDASSHR 128


>gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  100 bits (250), Expect = 1e-19
 Identities = 53/116 (45%), Positives = 75/116 (64%), Gaps = 3/116 (2%)
 Frame = +1

Query: 1   LDYALLVFEQLEEPNIFMWNTMIRGYAGSESPKRSISFYTGMRERGMVPNNYTFTFLIKA 180
           L YA  VFE ++EPN  +WNTMIRG+A S  P  S++ Y  M   G++PN+YTF FL+K+
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 181 CASSN--SSGPAVHAQSIVFGIPDSDVHVYTSLLNMYALG-NVEIARKVFDRMKYK 339
           CA S   + G  +H Q +  G  D D++V+TSL++MY     +E A KVFDR  ++
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGF-DLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHR 128


>gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  100 bits (250), Expect = 1e-19
 Identities = 52/116 (44%), Positives = 74/116 (63%), Gaps = 3/116 (2%)
 Frame = +1

Query: 1   LDYALLVFEQLEEPNIFMWNTMIRGYAGSESPKRSISFYTGMRERGMVPNNYTFTFLIKA 180
           L YA+ VF+ ++EPN+ +WNTM RG+A S  P  ++  Y  M   G+VPN+YTF FL+KA
Sbjct: 53  LTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKA 112

Query: 181 CASSNS--SGPAVHAQSIVFGIPDSDVHVYTSLLNMYAL-GNVEIARKVFDRMKYK 339
           CA S +   G  +H   +  G  D D++V+TSL+ MY   G  E ARKVFD+  ++
Sbjct: 113 CAKSKAFREGQQIHGHVLKLGC-DLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHR 167


>ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338275|gb|EFH68692.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 741

 Score =  100 bits (249), Expect = 1e-19
 Identities = 51/116 (43%), Positives = 75/116 (64%), Gaps = 3/116 (2%)
 Frame = +1

Query: 1   LDYALLVFEQLEEPNIFMWNTMIRGYAGSESPKRSISFYTGMRERGMVPNNYTFTFLIKA 180
           L YA+ VFE ++EPN+ +WNTM RG+A S  P  ++  Y  M   G++PN+YTF FL+K+
Sbjct: 84  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 143

Query: 181 CASSNS--SGPAVHAQSIVFGIPDSDVHVYTSLLNMYAL-GNVEIARKVFDRMKYK 339
           CA S +   G  +H   +  G  D D+ V+TSL+++Y   G +E ARKVFDR  ++
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGY-DLDLFVHTSLISVYVQNGRLEDARKVFDRSPHR 198