BLASTX nr result

ID: Coptis23_contig00024317 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024317
         (289 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305167.1| predicted protein [Populus trichocarpa] gi|2...    80   2e-13
gb|ABK94526.1| unknown [Populus trichocarpa]                           80   2e-13
ref|XP_002283938.1| PREDICTED: uncharacterized protein LOC100258...    78   7e-13
ref|XP_002520619.1| conserved hypothetical protein [Ricinus comm...    69   2e-12
ref|XP_004171611.1| PREDICTED: elongator complex protein 5-like ...    74   1e-11

>ref|XP_002305167.1| predicted protein [Populus trichocarpa] gi|222848131|gb|EEE85678.1|
           predicted protein [Populus trichocarpa]
          Length = 386

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 33/67 (49%), Positives = 50/67 (74%)
 Frame = -1

Query: 205 LYSCSLQPFIKHLICKKSQSKCLVLIAFDKSPSFYYELLRSKGVDVNTMKNWLRILDCYS 26
           ++S  L      ++  KSQS+ +V++AF +SPSFY +LL+S+G+DVN+   W++ILDCY+
Sbjct: 36  VFSHVLSQLSSFILASKSQSRGIVIVAFSRSPSFYVDLLKSRGIDVNSSHKWVQILDCYT 95

Query: 25  DPLGWKD 5
           DPL WKD
Sbjct: 96  DPLCWKD 102


>gb|ABK94526.1| unknown [Populus trichocarpa]
          Length = 379

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 33/67 (49%), Positives = 50/67 (74%)
 Frame = -1

Query: 205 LYSCSLQPFIKHLICKKSQSKCLVLIAFDKSPSFYYELLRSKGVDVNTMKNWLRILDCYS 26
           ++S  L      ++  KSQS+ +V++AF +SPSFY +LL+S+G+DVN+   W++ILDCY+
Sbjct: 36  VFSHVLSQLSSFILASKSQSRGIVIVAFSRSPSFYVDLLKSRGIDVNSSHKWVQILDCYT 95

Query: 25  DPLGWKD 5
           DPL WKD
Sbjct: 96  DPLCWKD 102


>ref|XP_002283938.1| PREDICTED: uncharacterized protein LOC100258368 [Vitis vinifera]
           gi|296087267|emb|CBI33641.3| unnamed protein product
           [Vitis vinifera]
          Length = 376

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 32/67 (47%), Positives = 49/67 (73%)
 Frame = -1

Query: 205 LYSCSLQPFIKHLICKKSQSKCLVLIAFDKSPSFYYELLRSKGVDVNTMKNWLRILDCYS 26
           +++  L     +++  KSQSK +VL+AF +SPSFY + L++ G+D+ + K W+ ILDCY+
Sbjct: 36  VFNYVLTKLSSNILAGKSQSKGIVLVAFSRSPSFYVDFLKTNGIDLVSAKKWISILDCYT 95

Query: 25  DPLGWKD 5
           DPLGWKD
Sbjct: 96  DPLGWKD 102


>ref|XP_002520619.1| conserved hypothetical protein [Ricinus communis]
           gi|223540180|gb|EEF41755.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 376

 Score = 68.9 bits (167), Expect(2) = 2e-12
 Identities = 27/55 (49%), Positives = 43/55 (78%)
 Frame = -1

Query: 169 LICKKSQSKCLVLIAFDKSPSFYYELLRSKGVDVNTMKNWLRILDCYSDPLGWKD 5
           ++ +KSQ + +V++A+ +SPSFY +LL+ + +DV +   W+ ILDCY+DPLGWKD
Sbjct: 48  ILAQKSQFQGIVVLAYTRSPSFYVDLLKRRKIDVASSHKWIYILDCYTDPLGWKD 102



 Score = 27.7 bits (60), Expect(2) = 2e-12
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 219 YGFQAFTHVLCSLSSNILSAKS 154
           +GF  F HVL  LSS IL+ KS
Sbjct: 32  FGFDMFAHVLSRLSSFILAQKS 53


>ref|XP_004171611.1| PREDICTED: elongator complex protein 5-like [Cucumis sativus]
          Length = 178

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 30/65 (46%), Positives = 48/65 (73%)
 Frame = -1

Query: 202 YSCSLQPFIKHLICKKSQSKCLVLIAFDKSPSFYYELLRSKGVDVNTMKNWLRILDCYSD 23
           +S  L     +++  KSQS+ LVL++F +SP++Y +LL+ +G+DV +   W++ILDCY+D
Sbjct: 37  FSHVLTQLSSNILAGKSQSRGLVLLSFSRSPAYYVQLLKKRGLDVGSSAKWIQILDCYTD 96

Query: 22  PLGWK 8
           PLGWK
Sbjct: 97  PLGWK 101


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