BLASTX nr result

ID: Coptis23_contig00024223 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00024223
         (387 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21098.3| unnamed protein product [Vitis vinifera]               92   3e-17
ref|XP_002282976.2| PREDICTED: aberrant root formation protein 4...    77   1e-12
emb|CAN76626.1| hypothetical protein VITISV_003542 [Vitis vinifera]    74   9e-12
ref|XP_002308688.1| predicted protein [Populus trichocarpa] gi|2...    73   2e-11
gb|JAA73542.1| Hypothetical protein, partial [Ixodes ricinus]          72   6e-11

>emb|CBI21098.3| unnamed protein product [Vitis vinifera]
          Length = 606

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 47/81 (58%), Positives = 59/81 (72%)
 Frame = +2

Query: 131 GMCKEPASFTPLFAALSKVLISLQRRHFEHIKEALPAVLKVLQAVSSELDDETQDSYQDL 310
           GM K P  + P  + LSKV +S+ RRHFE +KEA+P +L VL+A++SELDDE  +S +DL
Sbjct: 145 GMSKAPNYYAPFLSGLSKVFLSIPRRHFEQVKEAVPVILSVLKAMTSELDDEDTNS-EDL 203

Query: 311 IDRAIGIANSIQEVCQKLEGR 373
             RAI IANSIQ VC KL GR
Sbjct: 204 FARAISIANSIQTVCGKLAGR 224


>ref|XP_002282976.2| PREDICTED: aberrant root formation protein 4-like [Vitis vinifera]
          Length = 668

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 39/66 (59%), Positives = 50/66 (75%)
 Frame = +2

Query: 176 LSKVLISLQRRHFEHIKEALPAVLKVLQAVSSELDDETQDSYQDLIDRAIGIANSIQEVC 355
           +  V +S+ RRHFE +KEA+P +L VL+A++SELDDE  +S +DL  RAI IANSIQ VC
Sbjct: 219 VGNVFLSIPRRHFEQVKEAVPVILSVLKAMTSELDDEDTNS-EDLFARAISIANSIQTVC 277

Query: 356 QKLEGR 373
            KL GR
Sbjct: 278 GKLAGR 283


>emb|CAN76626.1| hypothetical protein VITISV_003542 [Vitis vinifera]
          Length = 395

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 38/63 (60%), Positives = 48/63 (76%)
 Frame = +2

Query: 185 VLISLQRRHFEHIKEALPAVLKVLQAVSSELDDETQDSYQDLIDRAIGIANSIQEVCQKL 364
           V +S+ R HFE +KEA+P +L VL+A++SELDDE  +S +DL  RAI IANSIQ VC KL
Sbjct: 30  VFLSIPRXHFEQVKEAVPVILSVLKAMTSELDDEDTNS-EDLFARAISIANSIQTVCGKL 88

Query: 365 EGR 373
            GR
Sbjct: 89  AGR 91


>ref|XP_002308688.1| predicted protein [Populus trichocarpa] gi|222854664|gb|EEE92211.1|
           predicted protein [Populus trichocarpa]
          Length = 568

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 39/88 (44%), Positives = 56/88 (63%)
 Frame = +2

Query: 110 KVLYTHKGMCKEPASFTPLFAALSKVLISLQRRHFEHIKEALPAVLKVLQAVSSELDDET 289
           + L +  GM        PL + +SKVL+++QRRHFE +K A+P +L VL+AV SE     
Sbjct: 99  EALDSWNGMVHAYDFVAPLLSGISKVLLAIQRRHFEQVKVAVPVILNVLKAVCSEFSARD 158

Query: 290 QDSYQDLIDRAIGIANSIQEVCQKLEGR 373
            +   +L  RA+GIA+SI+ +C KLEGR
Sbjct: 159 TEC-MNLFIRALGIADSIRAICAKLEGR 185


>gb|JAA73542.1| Hypothetical protein, partial [Ixodes ricinus]
          Length = 215

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 37/76 (48%), Positives = 48/76 (63%)
 Frame = +2

Query: 146 PASFTPLFAALSKVLISLQRRHFEHIKEALPAVLKVLQAVSSELDDETQDSYQDLIDRAI 325
           P  F PL   L KVL  +QRRH+EH+K  +P VL VL+ + SE D E  D Y+ L  +A 
Sbjct: 70  PGYFVPLLNGLMKVLALIQRRHYEHVKTTVPVVLNVLRIICSEPDYEDTD-YEKLFHKAA 128

Query: 326 GIANSIQEVCQKLEGR 373
           GIA SI+ +C KLE +
Sbjct: 129 GIACSIRAICAKLEDK 144


Top