BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00023344
         (819 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529988.1| conserved hypothetical protein [Ricinus comm...    88   8e-22
sp|Q2ABE5.1|RBR_CAMSI RecName: Full=Retinoblastoma-related prote...    88   9e-21
gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Popul...    83   2e-20
gb|AFJ64573.1| retinoblastoma-related protein 1 [Brassica juncea]      80   2e-20
gb|AFJ64571.1| retinoblastoma-related protein 1 [Brassica nigra]       80   2e-20

>ref|XP_002529988.1| conserved hypothetical protein [Ricinus communis]
           gi|254789790|sp|B9SVG9.1|RBR_RICCO RecName:
           Full=Retinoblastoma-related protein
           gi|223530511|gb|EEF32393.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 1020

 Score = 87.8 bits (216), Expect(2) = 8e-22
 Identities = 42/62 (67%), Positives = 52/62 (83%)
 Frame = -3

Query: 301 ILILHVPVCFRNFCILDSPRFVRKGSKCVELLASLCNMYDTSEDDLRRTLEKTNDLIPGL 122
           ILI+HVPV FRNF + DS RFV+KG K V+LLASLCN YDTSED+LR+T+EKTN+LI  +
Sbjct: 229 ILIIHVPVRFRNFNLNDSQRFVKKGDKGVDLLASLCNKYDTSEDELRKTMEKTNNLIADI 288

Query: 121 YR 116
            +
Sbjct: 289 LK 290



 Score = 42.4 bits (98), Expect(2) = 8e-22
 Identities = 23/43 (53%), Positives = 25/43 (58%)
 Frame = -1

Query: 129 LDCIDTDGLIYFEDXXXXXXXXXXXSTLEKDYNDAILNKCELD 1
           LD I+TDGLIY+ED             LEKDY DAI  K ELD
Sbjct: 304 LDNINTDGLIYYEDLMEESSLRSSLDILEKDYEDAIRCKGELD 346


>sp|Q2ABE5.1|RBR_CAMSI RecName: Full=Retinoblastoma-related protein
           gi|89111303|dbj|BAE80326.1| retinoblastoma related
           protein [Camellia sinensis]
          Length = 1025

 Score = 87.8 bits (216), Expect(2) = 9e-21
 Identities = 41/67 (61%), Positives = 54/67 (80%)
 Frame = -3

Query: 316 ILMRVILILHVPVCFRNFCILDSPRFVRKGSKCVELLASLCNMYDTSEDDLRRTLEKTND 137
           + +  ILI+H+PV  RNF + DSPRFV KGSK V+LLASLCN+Y+TSED+LR+T+EK ND
Sbjct: 230 VAILAILIIHIPVRVRNFNLHDSPRFVMKGSKGVDLLASLCNIYETSEDELRKTMEKAND 289

Query: 136 LIPGLYR 116
           LI  + +
Sbjct: 290 LIEDILK 296



 Score = 38.9 bits (89), Expect(2) = 9e-21
 Identities = 22/43 (51%), Positives = 24/43 (55%)
 Frame = -1

Query: 129 LDCIDTDGLIYFEDXXXXXXXXXXXSTLEKDYNDAILNKCELD 1
           L+ I TDGLIYFED           + L KDY DA  NK ELD
Sbjct: 310 LENIATDGLIYFEDLLDDTSLPSSLNILGKDYADATRNKGELD 352


>gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Populus tremula x Populus
           tremuloides]
          Length = 1035

 Score = 83.2 bits (204), Expect(2) = 2e-20
 Identities = 39/62 (62%), Positives = 49/62 (79%)
 Frame = -3

Query: 301 ILILHVPVCFRNFCILDSPRFVRKGSKCVELLASLCNMYDTSEDDLRRTLEKTNDLIPGL 122
           +LI+HVPVCFRNF   DS  FVRKG K V+LLASLCN YDTSE+ LR+++E TN+LI  +
Sbjct: 245 VLIIHVPVCFRNFSFNDSQWFVRKGDKGVDLLASLCNKYDTSEEVLRKSMETTNNLIANI 304

Query: 121 YR 116
            +
Sbjct: 305 LK 306



 Score = 42.4 bits (98), Expect(2) = 2e-20
 Identities = 21/40 (52%), Positives = 25/40 (62%)
 Frame = -1

Query: 120 IDTDGLIYFEDXXXXXXXXXXXSTLEKDYNDAILNKCELD 1
           I+ DGLIY+ED           + LEKDY+DAI NK ELD
Sbjct: 323 INPDGLIYYEDLMEESSLQSSLNILEKDYDDAIRNKAELD 362


>gb|AFJ64573.1| retinoblastoma-related protein 1 [Brassica juncea]
          Length = 1017

 Score = 79.7 bits (195), Expect(2) = 2e-20
 Identities = 40/65 (61%), Positives = 51/65 (78%)
 Frame = -3

Query: 325 IVEILMRVILILHVPVCFRNFCILDSPRFVRKGSKCVELLASLCNMYDTSEDDLRRTLEK 146
           +V IL   ILI+HVP  FRNF I DS RFV+KG K V+L+ASLC +YD SED+LR+T++K
Sbjct: 219 LVSIL--AILIIHVPCRFRNFNIQDSSRFVKKGDKDVDLIASLCKIYDASEDELRKTMDK 276

Query: 145 TNDLI 131
            N+LI
Sbjct: 277 ANNLI 281



 Score = 45.4 bits (106), Expect(2) = 2e-20
 Identities = 23/43 (53%), Positives = 26/43 (60%)
 Frame = -1

Query: 129 LDCIDTDGLIYFEDXXXXXXXXXXXSTLEKDYNDAILNKCELD 1
           LD I+ DGL YFED            TLEKDY+DA+ NK ELD
Sbjct: 300 LDNINPDGLTYFEDLLDETSISTSLITLEKDYDDAVCNKGELD 342


>gb|AFJ64571.1| retinoblastoma-related protein 1 [Brassica nigra]
          Length = 1017

 Score = 79.7 bits (195), Expect(2) = 2e-20
 Identities = 40/65 (61%), Positives = 51/65 (78%)
 Frame = -3

Query: 325 IVEILMRVILILHVPVCFRNFCILDSPRFVRKGSKCVELLASLCNMYDTSEDDLRRTLEK 146
           +V IL   ILI+HVP  FRNF I DS RFV+KG K V+L+ASLC +YD SED+LR+T++K
Sbjct: 219 LVSIL--AILIIHVPCRFRNFNIQDSSRFVKKGDKDVDLIASLCKIYDASEDELRKTMDK 276

Query: 145 TNDLI 131
            N+LI
Sbjct: 277 ANNLI 281



 Score = 45.4 bits (106), Expect(2) = 2e-20
 Identities = 23/43 (53%), Positives = 26/43 (60%)
 Frame = -1

Query: 129 LDCIDTDGLIYFEDXXXXXXXXXXXSTLEKDYNDAILNKCELD 1
           LD I+ DGL YFED            TLEKDY+DA+ NK ELD
Sbjct: 300 LDNINPDGLTYFEDLLDETSISTSLITLEKDYDDAVCNKGELD 342