BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016404
         (589 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containi...   119   9e-42
ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containi...   114   1e-39
ref|XP_002528356.1| pentatricopeptide repeat-containing protein,...   112   4e-37
ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containi...   100   2e-34
ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containi...    94   2e-32

>ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
           [Vitis vinifera]
          Length = 590

 Score =  119 bits (298), Expect(2) = 9e-42
 Identities = 60/88 (68%), Positives = 72/88 (81%)
 Frame = -3

Query: 269 TLASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPFTASSLVHFYSKCRLSNDAVKAFNEI 90
           TLASL KTCASL SL FGLQLHS SLKL LS  PF +S+LV+FYSKCRL  +A + F+EI
Sbjct: 113 TLASLLKTCASLPSLSFGLQLHSLSLKLSLSAQPFVSSALVNFYSKCRLPLEACRVFDEI 172

Query: 89  AERDEVCYSAIIVGLAQNSQPTRALSLF 6
            ERDEVC++A+IVGLAQN++P  AL +F
Sbjct: 173 TERDEVCFAAMIVGLAQNARPVDALLVF 200



 Score = 76.6 bits (187), Expect(2) = 9e-42
 Identities = 43/73 (58%), Positives = 53/73 (72%), Gaps = 2/73 (2%)
 Frame = -2

Query: 588 DPWCTHTQLIKNARKDLSLINNLITSYSKSNLLSDALRLF-RQIPSPNVVTWTALISS-T 415
           +P   H Q IK+A  D S  N+LIT YSKSNLLS A+R+F   IPSPNVV+WTALIS+  
Sbjct: 31  NPRLIHAQAIKSAITDRSFYNSLITLYSKSNLLSKAVRIFHHHIPSPNVVSWTALISAYA 90

Query: 414 NTVFSFHHYISML 376
           +T F+  H+ISML
Sbjct: 91  STSFALLHFISML 103


>ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
           gi|449487598|ref|XP_004157706.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 583

 Score =  114 bits (286), Expect(2) = 1e-39
 Identities = 56/88 (63%), Positives = 69/88 (78%)
 Frame = -3

Query: 269 TLASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPFTASSLVHFYSKCRLSNDAVKAFNEI 90
           TLA LFKTCASL  + FG  LHS + KL L + P++ S+LV+FYSKCRL NDA K F+EI
Sbjct: 109 TLAPLFKTCASLPCVSFGFALHSLAYKLSLCNGPYSGSALVNFYSKCRLFNDACKVFDEI 168

Query: 89  AERDEVCYSAIIVGLAQNSQPTRALSLF 6
           + RDE CYSA++VGLAQN+Q  RALS+F
Sbjct: 169 SYRDEFCYSALVVGLAQNAQSIRALSMF 196



 Score = 73.9 bits (180), Expect(2) = 1e-39
 Identities = 37/72 (51%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
 Frame = -2

Query: 588 DPWCTHTQLIKNARKDLSLINNLITSYSKSNLLSDALRLFRQIPSPNVVTWTALISS-TN 412
           DP   H Q IK+   +  + NNLIT YSK+NLL  + RLF QIP P++V+WTALIS+ ++
Sbjct: 28  DPRIDHAQAIKSPATECVVYNNLITRYSKANLLHYSARLFNQIPFPDIVSWTALISAHSS 87

Query: 411 TVFSFHHYISML 376
           T  S  H++SML
Sbjct: 88  TFLSLRHFVSML 99


>ref|XP_002528356.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532224|gb|EEF34028.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 356

 Score =  112 bits (281), Expect(2) = 4e-37
 Identities = 56/88 (63%), Positives = 68/88 (77%)
 Frame = -3

Query: 269 TLASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPFTASSLVHFYSKCRLSNDAVKAFNEI 90
           TLASLFK C +LS+L FG  LHS +LKL L   PF+ S+LV+FYSKCRL  +A K F+E+
Sbjct: 94  TLASLFKACTNLSALSFGFSLHSMALKLSLDTQPFSGSALVNFYSKCRLPENARKVFDEM 153

Query: 89  AERDEVCYSAIIVGLAQNSQPTRALSLF 6
            ERDEVCY A+IVGLAQNS+   ALS+F
Sbjct: 154 PERDEVCYGALIVGLAQNSRAIDALSVF 181



 Score = 67.8 bits (164), Expect(2) = 4e-37
 Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
 Frame = -2

Query: 588 DPWCTHTQLIKNARKDLSLINNLITSYSKSN---LLSDALRLFRQIPSPNVVTWTALISS 418
           DP   H Q IK+   +LS  N+LIT YS+S    + S A RLF  +PSPN+V+WT+LIS+
Sbjct: 10  DPRILHAQAIKSPYTNLSCFNHLITLYSRSPNFLVFSYANRLFSLLPSPNIVSWTSLISA 69

Query: 417 -TNTVFSFHHYISML 376
            T++  S HH++SML
Sbjct: 70  HTHSFLSLHHFLSML 84


>ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  100 bits (249), Expect(2) = 2e-34
 Identities = 49/89 (55%), Positives = 68/89 (76%)
 Frame = -3

Query: 269 TLASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPFTASSLVHFYSKCRLSNDAVKAFNEI 90
           TLASLF TCA+L+++ F L LHS +LKL L+H PF ASSL+  Y+K R+ ++A K F+EI
Sbjct: 100 TLASLFATCAALTAVSFALSLHSLALKLALAHHPFPASSLLSVYAKLRMPHNARKVFDEI 159

Query: 89  AERDEVCYSAIIVGLAQNSQPTRALSLFA 3
            + D VC+SA++V LAQNS+   ALS+F+
Sbjct: 160 PQPDNVCFSALVVALAQNSRSVDALSVFS 188



 Score = 70.9 bits (172), Expect(2) = 2e-34
 Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
 Frame = -2

Query: 588 DPWCTHTQLIKNARKDLSLINNLITSYSKSNLLSDALRLFRQIP-SPNVVTWTALISS-T 415
           DP   H + I +  KD ++ NNLIT YSKSNL S A+ LF ++P  PNVV+WTALIS+ +
Sbjct: 18  DPRVRHARAITSHAKDRAVWNNLITHYSKSNLSSYAVSLFHRLPFPPNVVSWTALISAHS 77

Query: 414 NTVFSFHHYISML 376
           NT+ S  H+++ML
Sbjct: 78  NTLLSLRHFLAML 90


>ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score = 94.0 bits (232), Expect(2) = 2e-32
 Identities = 48/89 (53%), Positives = 65/89 (73%)
 Frame = -3

Query: 269 TLASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPFTASSLVHFYSKCRLSNDAVKAFNEI 90
           T+ASLF TCA+L+++ F L LHS +LKL LS  PF ASSL+  Y+K R+  +A K F+EI
Sbjct: 100 TVASLFTTCAALTAVSFALSLHSLALKLSLSQHPFPASSLLSLYAKLRMPLNARKVFDEI 159

Query: 89  AERDEVCYSAIIVGLAQNSQPTRALSLFA 3
            + D VC+SA+IV LAQNS+   A S+F+
Sbjct: 160 PQPDNVCFSALIVALAQNSRSVDASSVFS 188



 Score = 70.5 bits (171), Expect(2) = 2e-32
 Identities = 38/73 (52%), Positives = 53/73 (72%), Gaps = 2/73 (2%)
 Frame = -2

Query: 588 DPWCTHTQLIKNARKDLSLINNLITSYSKSNLLSDALRLFRQIP-SPNVVTWTALISS-T 415
           DP   H Q I +  KD ++ NNLIT YSKS+L S A+ LF+++P  PNVV+WTALIS+ +
Sbjct: 18  DPRARHAQAITSHIKDRAVWNNLITHYSKSDLSSYAVSLFQRLPFPPNVVSWTALISAHS 77

Query: 414 NTVFSFHHYISML 376
           NT+ S  H+++ML
Sbjct: 78  NTLLSLRHFLAML 90