BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016302
         (1129 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276868.1| PREDICTED: nuclear cap-binding protein subun...   284   3e-74
gb|AFK38601.1| unknown [Lotus japonicus]                              278   1e-72
ref|XP_004137136.1| PREDICTED: nuclear cap-binding protein subun...   270   5e-70
gb|ACN43578.1| nuclear cap-binding protein [Nicotiana tabacum] g...   268   2e-69
ref|XP_002863606.1| cap-binding protein 20 [Arabidopsis lyrata s...   268   2e-69

>ref|XP_002276868.1| PREDICTED: nuclear cap-binding protein subunit 2-like isoform 1
            [Vitis vinifera] gi|359485224|ref|XP_003633238.1|
            PREDICTED: nuclear cap-binding protein subunit 2-like
            isoform 2 [Vitis vinifera]
            gi|359485226|ref|XP_003633239.1| PREDICTED: nuclear
            cap-binding protein subunit 2-like isoform 3 [Vitis
            vinifera]
          Length = 253

 Score =  284 bits (726), Expect = 3e-74
 Identities = 152/248 (61%), Positives = 168/248 (67%)
 Frame = -3

Query: 1079 MASLFKDPNKLSAYRDRRFPGSQEDFENALQTSTTVYLGNMSFYTTEEQVYELFSRAGEI 900
            MA LFKDP+KLSAYRD+RFPG+QEDFE+AL TS TVY+GNMSFYTTEEQVYELFSRAGEI
Sbjct: 1    MALLFKDPSKLSAYRDKRFPGTQEDFEHALLTSMTVYIGNMSFYTTEEQVYELFSRAGEI 60

Query: 899  KKIIMGLDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVSGTILDDRPI 720
            KKIIMGLDK                                       Y+SGT+LDDRPI
Sbjct: 61   KKIIMGLDKNSKTPCGFCFVLYYSRDDAEDAVK---------------YISGTVLDDRPI 105

Query: 719  RVDFDWGFXXXXXXXXXXXXXQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSL 540
            RVDFDWGF             QVRDEYRTDYDPGRGGYGKLVQ+ELEAQRQLVDYG+GSL
Sbjct: 106  RVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQRELEAQRQLVDYGSGSL 165

Query: 539  GSFQQFMPSQYXXXXXXXXXGVPHRQNRDYHRKRQRDDDRRAPQKSRRFPENEIRRASDH 360
            GSF   MPSQY         G  +R +RDY RKR RDDDR +   S+R  +++ RR SDH
Sbjct: 166  GSFPPVMPSQYGRHGGSQGHGGSNRHSRDYPRKRHRDDDRHSHDFSKRTSDHDSRRNSDH 225

Query: 359  DSRPEKNP 336
            DSRPEKNP
Sbjct: 226  DSRPEKNP 233


>gb|AFK38601.1| unknown [Lotus japonicus]
          Length = 253

 Score =  278 bits (712), Expect = 1e-72
 Identities = 150/248 (60%), Positives = 163/248 (65%)
 Frame = -3

Query: 1079 MASLFKDPNKLSAYRDRRFPGSQEDFENALQTSTTVYLGNMSFYTTEEQVYELFSRAGEI 900
            MA+LFKD  KLSAYRDRRFPG+Q++FE AL  STTVY+GNMSFYTTEEQVYELFSRAGEI
Sbjct: 1    MATLFKDLTKLSAYRDRRFPGTQDEFEQALLASTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 899  KKIIMGLDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVSGTILDDRPI 720
            KKIIMGLDK                                       YVSGTILDDRPI
Sbjct: 61   KKIIMGLDKNTKTPCGFCFVLYYSREDTEDACK---------------YVSGTILDDRPI 105

Query: 719  RVDFDWGFXXXXXXXXXXXXXQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSL 540
            RVDFDWGF             QVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYG+GSL
Sbjct: 106  RVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGSGSL 165

Query: 539  GSFQQFMPSQYXXXXXXXXXGVPHRQNRDYHRKRQRDDDRRAPQKSRRFPENEIRRASDH 360
            GSF   + + Y         G  HR  RDYHRKR RDDD    + S+R  ++E RR SDH
Sbjct: 166  GSFPPMVSTSYGRHGRNHGHGGSHRPGRDYHRKRHRDDDHHTNESSKRTSDHESRRNSDH 225

Query: 359  DSRPEKNP 336
            +SRPEKNP
Sbjct: 226  ESRPEKNP 233


>ref|XP_004137136.1| PREDICTED: nuclear cap-binding protein subunit 2-like [Cucumis
            sativus] gi|449476391|ref|XP_004154724.1| PREDICTED:
            nuclear cap-binding protein subunit 2-like [Cucumis
            sativus]
          Length = 251

 Score =  270 bits (690), Expect = 5e-70
 Identities = 154/249 (61%), Positives = 165/249 (66%), Gaps = 1/249 (0%)
 Frame = -3

Query: 1079 MASLFKDPNKLSAYRDRRFPGSQEDFENALQTSTTVYLGNMSFYTTEEQVYELFSRAGEI 900
            MASLFKDP KLS YRDRRF GSQ++FE ALQTSTTVY+GNMSFYTTEEQVYELFSRAGEI
Sbjct: 1    MASLFKDPTKLSIYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 899  KKIIMGLDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVSGTILDDRPI 720
            KKIIMGLDK                                       Y+SGTILDDRPI
Sbjct: 61   KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVK---------------YISGTILDDRPI 105

Query: 719  RVDFDWGFXXXXXXXXXXXXXQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSL 540
            RVDFDWGF             QVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSL
Sbjct: 106  RVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSL 165

Query: 539  GSFQQFMPSQYXXXXXXXXXGVPHRQNRDY-HRKRQRDDDRRAPQKSRRFPENEIRRASD 363
            GS    MP QY         G  +R  RDY HRKR RDDDR A + S+R  + E RR S+
Sbjct: 166  GSMAPVMP-QYGKHGGSHGHG--NRHGRDYHHRKRYRDDDRHAHESSKRTSDYESRRNSN 222

Query: 362  HDSRPEKNP 336
            ++SRPEKNP
Sbjct: 223  YESRPEKNP 231


>gb|ACN43578.1| nuclear cap-binding protein [Nicotiana tabacum]
            gi|261866539|gb|ACY02034.1| cap binding protein 20
            [Nicotiana tabacum]
          Length = 254

 Score =  268 bits (685), Expect = 2e-69
 Identities = 146/249 (58%), Positives = 161/249 (64%), Gaps = 1/249 (0%)
 Frame = -3

Query: 1079 MASLFKDPNKLSAYRDRRFPGSQEDFENALQTSTTVYLGNMSFYTTEEQVYELFSRAGEI 900
            MASLFKD  K+SAYRDRRFPG+QE+FE+AL  +TTVY+GNMSFYTTEEQVYELFSRAGEI
Sbjct: 1    MASLFKDLAKISAYRDRRFPGTQEEFEDALLKATTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 899  KKIIMGLDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVSGTILDDRPI 720
            KKI+MGLDK                                       Y+SGTILDDRPI
Sbjct: 61   KKIVMGLDKNCKTPCGFCFVMFYSRDDTEDSVK---------------YISGTILDDRPI 105

Query: 719  RVDFDWGFXXXXXXXXXXXXXQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSL 540
            RVDFDWGF             QVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSL
Sbjct: 106  RVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSL 165

Query: 539  GSFQQFM-PSQYXXXXXXXXXGVPHRQNRDYHRKRQRDDDRRAPQKSRRFPENEIRRASD 363
            G++   M P  Y         G  +R  RDYHRKR R+DD       +R  + E RR SD
Sbjct: 166  GAYPPVMPPPHYGRHGGNQGYGGSYRHGRDYHRKRHREDDHHRSDYPKRSYDRESRRTSD 225

Query: 362  HDSRPEKNP 336
            H+SRPEKNP
Sbjct: 226  HESRPEKNP 234


>ref|XP_002863606.1| cap-binding protein 20 [Arabidopsis lyrata subsp. lyrata]
            gi|297309441|gb|EFH39865.1| cap-binding protein 20
            [Arabidopsis lyrata subsp. lyrata]
          Length = 257

 Score =  268 bits (684), Expect = 2e-69
 Identities = 149/252 (59%), Positives = 164/252 (65%), Gaps = 4/252 (1%)
 Frame = -3

Query: 1079 MASLFKDPNKLSAYRDRRFPGSQEDFENALQTSTTVYLGNMSFYTTEEQVYELFSRAGEI 900
            MASLFK+  KLSAYRDRRF G+QE+F+ AL+ STTVY+GN+SFYTTEEQ+YELFSRAGEI
Sbjct: 1    MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query: 899  KKIIMGLDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVSGTILDDRPI 720
            KKIIMGLDK                                       Y+SGTILDDRPI
Sbjct: 61   KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVK---------------YISGTILDDRPI 105

Query: 719  RVDFDWGFXXXXXXXXXXXXXQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSL 540
            RVDFDWGF             QVRDEYRTDYDP RGGYGKLVQKELEAQRQLVDYGTGSL
Sbjct: 106  RVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPARGGYGKLVQKELEAQRQLVDYGTGSL 165

Query: 539  GSFQQFMPSQY---XXXXXXXXXGVPHRQNR-DYHRKRQRDDDRRAPQKSRRFPENEIRR 372
            G++ Q  PS Y            G P+R  R DYHRKRQRDDDR     SRR  ++E RR
Sbjct: 166  GAYPQAAPSNYGNGRRGGGNYGQGGPNRHGRGDYHRKRQRDDDRYGRDNSRRNTDHESRR 225

Query: 371  ASDHDSRPEKNP 336
             +DHD RPEKNP
Sbjct: 226  DTDHDMRPEKNP 237