BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016224
         (450 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_192778.2| F-box protein [Arabidopsis thaliana] gi|1453330...    64   2e-08
ref|NP_192730.2| FBD, F-box and leucine rich repeat domain-conta...    64   2e-08
emb|CAB39793.1| putative protein [Arabidopsis thaliana] gi|72677...    64   2e-08
emb|CAB39616.1| hypothetical protein (probably remnant) [Arabido...    64   2e-08
ref|NP_191051.2| leucine rich repeat and F-Box domain-containing...    63   3e-08

>ref|NP_192778.2| F-box protein [Arabidopsis thaliana]
           gi|145333003|ref|NP_001078367.1| F-box protein
           [Arabidopsis thaliana]
           gi|142989615|sp|Q9SV82.2|FBD40_ARATH RecName:
           Full=FBD-associated F-box protein At4g10400
           gi|119935957|gb|ABM06044.1| At4g10400 [Arabidopsis
           thaliana] gi|332657476|gb|AEE82876.1| F-box protein
           [Arabidopsis thaliana] gi|332657477|gb|AEE82877.1| F-box
           protein [Arabidopsis thaliana]
          Length = 409

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 6/150 (4%)
 Frame = -2

Query: 434 LSDLEFNQEDFENMEGKDRNAVDFRNFVDRLLISHNRSDIRSFKLIINERVDGRDAVLDD 255
           L+ L+F  + +   E K         F+DR L  H    I SF+L+++      D+    
Sbjct: 41  LTKLKFGSKRYSESEFKRLQC-----FLDRNLPLHRAPVIESFRLVLS------DSHFKP 89

Query: 254 IQINAWVLFALKHNVRELKLVFI-----SEVLPLCIFTCHTLTVLHLQW-VNLHFPSMVF 93
             I  WV+ A+   +RELK+          +LP  ++TC +L +L L   V L  P MV 
Sbjct: 90  EDIRMWVVVAVSRYIRELKIYSSHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVC 149

Query: 92  FPSLKTLELSHVYLYGENLTKNLFLSFPVL 3
            PSLKTLEL  V  + +   + L  + PVL
Sbjct: 150 LPSLKTLELKGVRYFKQGSLQRLLCNCPVL 179


>ref|NP_192730.2| FBD, F-box and leucine rich repeat domain-containing protein
           [Arabidopsis thaliana]
           gi|378405162|sp|Q9T0F1.2|FB226_ARATH RecName: Full=F-box
           protein At4g09920 gi|332657412|gb|AEE82812.1| FBD, F-box
           and leucine rich repeat domain-containing protein
           [Arabidopsis thaliana]
          Length = 316

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 6/150 (4%)
 Frame = -2

Query: 434 LSDLEFNQEDFENMEGKDRNAVDFRNFVDRLLISHNRSDIRSFKLIINERVDGRDAVLDD 255
           L+ L+F  + +   E K         F+DR L  H    I SF+L+++      D+    
Sbjct: 41  LTKLKFGSKRYSESEFKRLQC-----FLDRNLPLHRAPVIESFRLVLS------DSHFKP 89

Query: 254 IQINAWVLFALKHNVRELKLVFI-----SEVLPLCIFTCHTLTVLHLQW-VNLHFPSMVF 93
             I  WV+ A+   +RELK+          +LP  ++TC +L +L L   V L  P MV 
Sbjct: 90  EDIRMWVVVAVSRYIRELKIYSSHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVC 149

Query: 92  FPSLKTLELSHVYLYGENLTKNLFLSFPVL 3
            PSLKTLEL  V  + +   + L  + PVL
Sbjct: 150 LPSLKTLELKGVRYFKQGSLQRLLCNCPVL 179


>emb|CAB39793.1| putative protein [Arabidopsis thaliana] gi|7267737|emb|CAB78163.1|
           putative protein [Arabidopsis thaliana]
          Length = 326

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 6/150 (4%)
 Frame = -2

Query: 434 LSDLEFNQEDFENMEGKDRNAVDFRNFVDRLLISHNRSDIRSFKLIINERVDGRDAVLDD 255
           L+ L+F  + +   E K         F+DR L  H    I SF+L+++      D+    
Sbjct: 41  LTKLKFGSKRYSESEFKRLQC-----FLDRNLPLHRAPVIESFRLVLS------DSHFKP 89

Query: 254 IQINAWVLFALKHNVRELKLVFI-----SEVLPLCIFTCHTLTVLHLQW-VNLHFPSMVF 93
             I  WV+ A+   +RELK+          +LP  ++TC +L +L L   V L  P MV 
Sbjct: 90  EDIRMWVVVAVSRYIRELKIYSSHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVC 149

Query: 92  FPSLKTLELSHVYLYGENLTKNLFLSFPVL 3
            PSLKTLEL  V  + +   + L  + PVL
Sbjct: 150 LPSLKTLELKGVRYFKQGSLQRLLCNCPVL 179


>emb|CAB39616.1| hypothetical protein (probably remnant) [Arabidopsis thaliana]
           gi|7267688|emb|CAB78115.1| hypothetical protein
           (probably remnant) [Arabidopsis thaliana]
          Length = 414

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 6/150 (4%)
 Frame = -2

Query: 434 LSDLEFNQEDFENMEGKDRNAVDFRNFVDRLLISHNRSDIRSFKLIINERVDGRDAVLDD 255
           L+ L+F  + +   E K         F+DR L  H    I SF+L+++      D+    
Sbjct: 41  LTKLKFGSKRYSESEFKRLQC-----FLDRNLPLHRAPVIESFRLVLS------DSHFKP 89

Query: 254 IQINAWVLFALKHNVRELKLVFI-----SEVLPLCIFTCHTLTVLHLQW-VNLHFPSMVF 93
             I  WV+ A+   +RELK+          +LP  ++TC +L +L L   V L  P MV 
Sbjct: 90  EDIRMWVVVAVSRYIRELKIYSSHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVC 149

Query: 92  FPSLKTLELSHVYLYGENLTKNLFLSFPVL 3
            PSLKTLEL  V  + +   + L  + PVL
Sbjct: 150 LPSLKTLELKGVRYFKQGSLQRLLCNCPVL 179


>ref|NP_191051.2| leucine rich repeat and F-Box domain-containing protein
           [Arabidopsis thaliana] gi|79315081|ref|NP_001030863.1|
           leucine rich repeat and F-Box domain-containing protein
           [Arabidopsis thaliana] gi|145332847|ref|NP_001078289.1|
           leucine rich repeat and F-Box domain-containing protein
           [Arabidopsis thaliana] gi|63003866|gb|AAY25462.1|
           At3g54910 [Arabidopsis thaliana]
           gi|332645789|gb|AEE79310.1| leucine rich repeat and
           F-Box domain-containing protein [Arabidopsis thaliana]
           gi|332645790|gb|AEE79311.1| leucine rich repeat and
           F-Box domain-containing protein [Arabidopsis thaliana]
           gi|332645791|gb|AEE79312.1| leucine rich repeat and
           F-Box domain-containing protein [Arabidopsis thaliana]
          Length = 373

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
 Frame = -2

Query: 356 FVDRLLISHNRSDIRSFKLIINERVDGRDAVLDDIQINAWVLFALKHNVRELKLVFIS-- 183
           F+D+ L  H    I SF+L +       D+      I  WV+ A+ H +REL++++ S  
Sbjct: 22  FLDKNLPLHRAPVIESFRLYLI------DSKCTPENIKMWVVIAVSHCLRELEVIYSSYP 75

Query: 182 ---EVLPLCIFTCHTLTVLHLQW-VNLHFPSMVFFPSLKTLELSHVYLYGENLTKNLFLS 15
               +LP  ++TC +L +L L   + L  P M F PSLKTL+L  V    E+    L  +
Sbjct: 76  EKPNILPSNLYTCKSLVILELCGEIRLDVPRMAFLPSLKTLQLHSVRYLNEDSLHRLLSN 135

Query: 14  FPVL 3
            PVL
Sbjct: 136 CPVL 139