BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016205
         (803 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ91866.1| predicted protein [Hordeum vulgare subsp. vulgare]    121   2e-25
ref|XP_002318989.1| predicted protein [Populus trichocarpa] gi|2...   110   4e-22
ref|XP_003560798.1| PREDICTED: DNA-directed RNA polymerase I sub...   110   5e-22
emb|CBI19898.3| unnamed protein product [Vitis vinifera]              109   8e-22
gb|AAK18841.1|AC082645_11 putative RNA polymerase I subunit [Ory...   106   7e-21

>dbj|BAJ91866.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 125

 Score =  121 bits (303), Expect = 2e-25
 Identities = 54/119 (45%), Positives = 74/119 (62%)
 Frame = +1

Query: 133 DFMFCQICGTMLSFKSHKHAECSLCGFKRPAKEFAKCEISYTVTEEDFRRDLNKLEPFIK 312
           DF+FC +CGT+L F SH++A C LCGFKR AK+    E  Y VT ED RR+L K++PF+ 
Sbjct: 8   DFLFCGVCGTLLDFNSHRYASCPLCGFKRKAKDIEGKETRYAVTAEDIRREL-KIKPFVV 66

Query: 313 VKGSMNVNFEVTMKQSNEICGKCNKAYMNFTERQTRSADEGMTVTYHCPNCPHTETRNT 489
           ++ + N++  V    +   C KCN   + +  +Q RSADEG T+ Y CP C H    NT
Sbjct: 67  LESAPNLDIVVQRSLTERACPKCNHHELEYYTKQLRSADEGQTIFYECPECGHAFNENT 125


>ref|XP_002318989.1| predicted protein [Populus trichocarpa] gi|222857365|gb|EEE94912.1|
           predicted protein [Populus trichocarpa]
          Length = 117

 Score =  110 bits (275), Expect = 4e-22
 Identities = 56/120 (46%), Positives = 71/120 (59%)
 Frame = +1

Query: 127 GYDFMFCQICGTMLSFKSHKHAECSLCGFKRPAKEFAKCEISYTVTEEDFRRDLNKLEPF 306
           G DFMFC +CGTM+   S +H EC LC FK+ AK+ ++ EISY V+ ED RRDL      
Sbjct: 6   GGDFMFCDLCGTMMFLYSKEHVECPLCKFKKSAKDLSEREISYQVSSEDMRRDLG----I 61

Query: 307 IKVKGSMNVNFEVTMKQSNEICGKCNKAYMNFTERQTRSADEGMTVTYHCPNCPHTETRN 486
              +G M    EV   + N+ C KC    + F+ RQ RSADEG T  +HC NC +T T N
Sbjct: 62  SHFEGKM----EVKDMEINKKCEKCGHTKLKFSTRQMRSADEGQTTFFHCANCSYTFTEN 117


>ref|XP_003560798.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
           [Brachypodium distachyon]
          Length = 125

 Score =  110 bits (274), Expect = 5e-22
 Identities = 51/113 (45%), Positives = 69/113 (61%)
 Frame = +1

Query: 133 DFMFCQICGTMLSFKSHKHAECSLCGFKRPAKEFAKCEISYTVTEEDFRRDLNKLEPFIK 312
           DF+FC +CGT+L F S + A C LCGFKR AK     E  Y VT+ED RR+L K+EPF+ 
Sbjct: 8   DFLFCSVCGTLLDFDSVRSASCPLCGFKRKAKAIEGKETRYAVTDEDIRREL-KIEPFVT 66

Query: 313 VKGSMNVNFEVTMKQSNEICGKCNKAYMNFTERQTRSADEGMTVTYHCPNCPH 471
           ++ +  ++  V     +E C KC    + +  +Q R+ADEG TV Y CP C H
Sbjct: 67  LESAPKMDVIVQRVVVDETCPKCGHPQLEYHTKQLRAADEGQTVFYECPECRH 119


>emb|CBI19898.3| unnamed protein product [Vitis vinifera]
          Length = 126

 Score =  109 bits (272), Expect = 8e-22
 Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
 Frame = +1

Query: 133 DFMFCQICGTMLSFKSHKHAECSLCGFKRPAKEFAKCEISYTVTEEDFRRDLNKLEPFIK 312
           DFMFC +CGTML   S K+AEC LC  +R  K+ +  EI YTV+ ED RR+LN +EPF+K
Sbjct: 8   DFMFCNLCGTMLCMSSTKYAECPLCKSRRKVKDISGREIRYTVSAEDIRRELN-IEPFVK 66

Query: 313 VKGSMNVNFEVTMKQSNEICGKCNK-AYMNFTERQTRSADEGMTVTYHCPNCPHTETRNT 489
           + G +    E    ++   C +C +  ++ +  RQ RSADEG T+ Y C  C H  ++NT
Sbjct: 67  LDGIITEESEAQNAKTKGRCDRCEEDTWLYYYTRQLRSADEGQTIFYECTKCGHKWSQNT 126


>gb|AAK18841.1|AC082645_11 putative RNA polymerase I subunit [Oryza sativa Japonica Group]
           gi|108710721|gb|ABF98516.1| Transcription factor S-II
           family protein, expressed [Oryza sativa Japonica Group]
          Length = 126

 Score =  106 bits (264), Expect = 7e-21
 Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
 Frame = +1

Query: 133 DFMFCQICGTMLSFKSHKHAECSLCGFKRPAKEFAKCEISYTVTEEDFRRDLNKLEPFIK 312
           DF+FC +CGT+L F S + A C LCGFKR AK+    E  YTVT ED RR+L KL+P++ 
Sbjct: 8   DFLFCGVCGTLLKFDSVRSASCPLCGFKRKAKDIEGKETRYTVTAEDIRREL-KLDPYVI 66

Query: 313 VKGSMNVNFEVTMKQS-NEICGKCNKAYMNFTERQTRSADEGMTVTYHCPNCPHTETRN 486
           ++ ++     +  + + N+ C KC    + +  +Q RSADEG TV Y C NC H    N
Sbjct: 67  LETTLKEEDVIVERATVNKECEKCKNPELQYYTKQLRSADEGQTVFYKCANCRHEFNEN 125