BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016200
         (500 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containi...   130   1e-28
ref|NP_198814.1| pentatricopeptide repeat-containing protein [Ar...   127   9e-28
ref|XP_002870737.1| pentatricopeptide repeat-containing protein ...   123   2e-26
ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containi...   116   2e-24
ref|XP_003601624.1| Pentatricopeptide repeat-containing protein ...   112   3e-23

>ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
           gi|296087770|emb|CBI35026.3| unnamed protein product
           [Vitis vinifera]
          Length = 675

 Score =  130 bits (326), Expect = 1e-28
 Identities = 71/129 (55%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
 Frame = -2

Query: 382 YTNINKTEKHKPPSLLFTITSSSTHSPNKHVWKRNSNNTASLPTSST-HQTRHTHV-YLD 209
           ++  NKT+KH+   +L ++         K VW+R  + T SL +SS  H+ R   V +LD
Sbjct: 36  FSPFNKTQKHRACFILVSVF--------KDVWRRLPDETTSLLSSSRQHRPRKQRVVHLD 87

Query: 208 HSVDMDDLLLSISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLDWMIE 29
           HSVDMD+LL SISQTS +QELYSL+S YK RQLS+RFMVS+L+RE DWQR++ALLDW+ E
Sbjct: 88  HSVDMDELLASISQTSNEQELYSLMSPYKGRQLSIRFMVSLLSREPDWQRSLALLDWINE 147

Query: 28  EAGYIPSVY 2
           EA Y PSV+
Sbjct: 148 EASYSPSVF 156


>ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic; Flags: Precursor
           gi|10176990|dbj|BAB10222.1| unnamed protein product
           [Arabidopsis thaliana] gi|332007115|gb|AED94498.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 678

 Score =  127 bits (319), Expect = 9e-28
 Identities = 64/118 (54%), Positives = 86/118 (72%), Gaps = 4/118 (3%)
 Frame = -2

Query: 343 SLLFTIT--SSSTHSPNKHVWKRN--SNNTASLPTSSTHQTRHTHVYLDHSVDMDDLLLS 176
           +L+FT++  SSS  + NK VW++    N T+S      H+      +LDH+VDMD+LL S
Sbjct: 39  NLIFTVSASSSSESTQNKKVWRKQPEKNTTSSFQALRKHRRYQRSAFLDHNVDMDELLAS 98

Query: 175 ISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLDWMIEEAGYIPSVY 2
           I QT  ++EL+SLLS YKDRQLS+RFMVS+L+RE DWQR++ALLDW+ EEA Y PSV+
Sbjct: 99  IHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVF 156


>ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297316573|gb|EFH46996.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 680

 Score =  123 bits (308), Expect = 2e-26
 Identities = 64/120 (53%), Positives = 87/120 (72%), Gaps = 6/120 (5%)
 Frame = -2

Query: 343 SLLFTIT-SSSTHSPN---KHVWKRN--SNNTASLPTSSTHQTRHTHVYLDHSVDMDDLL 182
           +L+F ++ SSS+ SP+   K VW++    N T+S      H+      +LDH+VDMD+LL
Sbjct: 39  NLIFKVSASSSSSSPSTQTKKVWRKQPEKNTTSSFQALRKHRRYQRSAFLDHNVDMDELL 98

Query: 181 LSISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLDWMIEEAGYIPSVY 2
            SI QT  ++EL+SLLS YKDRQLS+RFMVS+L+RE DWQR++ALLDW+ EEA Y PSV+
Sbjct: 99  ASIHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVF 158


>ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
           gi|449530101|ref|XP_004172035.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
          Length = 680

 Score =  116 bits (291), Expect = 2e-24
 Identities = 62/118 (52%), Positives = 83/118 (70%), Gaps = 6/118 (5%)
 Frame = -2

Query: 337 LFTITSSSTHSPNKHVWKRNS----NNTASLPTSSTHQTRHTHV--YLDHSVDMDDLLLS 176
           +FT +SSST   +K +W+R +    + T  LP       R      +LDHS+DMD+LL S
Sbjct: 46  IFTASSSST---SKDIWRRQTPSEKSTTTLLPQKYQRSGRRPRESSHLDHSIDMDELLAS 102

Query: 175 ISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTVALLDWMIEEAGYIPSVY 2
           I QT  +QELYS+LS YK R+LS+RFMVS+L+RE+DWQR++A+LDW+ EEA Y PSVY
Sbjct: 103 IGQTKNEQELYSVLSPYKGRELSMRFMVSLLSRESDWQRSLAILDWINEEALYTPSVY 160


>ref|XP_003601624.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355490672|gb|AES71875.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  112 bits (280), Expect = 3e-23
 Identities = 61/136 (44%), Positives = 85/136 (62%), Gaps = 11/136 (8%)
 Frame = -2

Query: 379 TNINKTEKHKPPSLLFTITSSSTHSPNKHVWKRNSNNTASLPTSSTHQTRHTHV------ 218
           T  NKT    PP+   TI+++ST + +KHVW R   +     T+   Q +  H       
Sbjct: 28  TIFNKTT---PPTTNTTISTTSTSATSKHVWTRRIPHPPFSNTNKQQQQQQRHTRTQQQQ 84

Query: 217 -----YLDHSVDMDDLLLSISQTSTQQELYSLLSIYKDRQLSLRFMVSVLARETDWQRTV 53
                Y+D SVDM++LL SI+QT   ++LYS+LS Y  RQLS+RFM+S+L+RE DWQR++
Sbjct: 85  KQQSPYMDRSVDMNELLTSIAQTQNIEQLYSILSPYNGRQLSIRFMISILSREPDWQRSL 144

Query: 52  ALLDWMIEEAGYIPSV 5
           A+LDWM E A Y PS+
Sbjct: 145 AILDWMNEIAQYSPSL 160